RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 GCSAMQ8N6F7 178 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 HIST1H2BAQ96A08 127 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 MRPS18BQ9Y676 258 aaKnown RBP6.31□□□□□ -1.4
SYNE1-208ENST00000367256 ZNF729A6NN14 1252 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-208ENST00000367256 CTGFP29279 349 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 ZNF324BQ6AW86 544 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-208ENST00000367256 C1orf210Q8IVY1 113 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 TMEM252Q8N6L7 170 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 MARCH11A6NNE9 402 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 MRPL32Q9BYC8 188 aaKnown RBP6.31□□□□□ -1.4
SYNE1-208ENST00000367256 C17orf51A8MQB3 221 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 LAMTOR1Q6IAA8 161 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 SPSB4Q96A44 273 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 SH3BGRL3Q9H299 93 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 WDR54Q9H977 334 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 GRIFINA4D1Z8 144 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 RECKO95980 971 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 CCL3P10147 92 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 FAM27BQ5VT28 67 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 ZNF815PA8K554 130 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 UCP3P55916 312 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 TAF15Q92804 592 aaKnown RBP eCLIP6.3□□□□□ -1.4
SYNE1-208ENST00000367256 OR11H12B2RN74 326 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 HOXD4P09016 255 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-208ENST00000367256 OR11H1Q8NG94 326 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 OR11H2Q8NH07 326 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 SMIM8Q96KF7 97 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 TBL2Q9Y4P3 447 aaKnown RBP6.3□□□□□ -1.4
SYNE1-208ENST00000367256 SIGLEC5O15389 551 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 C1QL3Q5VWW1 255 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 OR4D11Q8NGI4 311 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 PLSCR2Q9NRY7 297 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 CLEC2AQ6UVW9 174 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 C9orf40Q8IXQ3 194 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 IFNL4K9M1U5 179 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 MGAT2Q10469 447 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 CCL13Q99616 98 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 R3HDMLQ9H3Y0 253 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 TMEM160Q9NX00 188 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 STARD6P59095 220 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 SRSF5Q13243 272 aaKnown RBP6.3□□□□□ -1.4
SYNE1-208ENST00000367256 TMEM95Q3KNT9 176 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 FAM106AQ4KMX7 169 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 TEX29Q8N6K0 151 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 NEUROG1Q92886 237 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 TTTY12Q9BZ98 90 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 PCDH15Q96QU1 1955 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 HRKO00198 91 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 RRHO14718 337 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 REG1AP05451 166 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 SLC25A53Q5H9E4 307 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 TCF23Q7RTU1 214 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 COL5A3P25940 1745 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-208ENST00000367256 CCL21O00585 134 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 CISD3P0C7P0 127 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 ZNF488Q96MN9 340 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 SHANK3Q9BYB0 1731 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 SBF1O95248 1867 aa6.3□□□□□ -1.4
SYNE1-208ENST00000367256 TRBV20OR9-2A0A075B6H5 130 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 PF4V1P10720 104 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 IGFBP6P24592 240 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-208ENST00000367256 ZPLD1Q8TCW7 415 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 MS4A5Q9H3V2 200 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 LCTP09848 1927 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 CEACAM4O75871 244 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 MMD2Q8IY49 270 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 PLA2G2FQ9BZM2 168 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 H7C1H1 209 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 DXOO77932 396 aaKnown RBP6.29□□□□□ -1.4
SYNE1-208ENST00000367256 ASAH2BP0C7U1 165 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 SSTR5P35346 364 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 FGF12P61328 243 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 PMS2CLQ68D20 193 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 UNQ9370/PRO34162Q6UXP9 181 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 APCDD1LQ8NCL9 501 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 SPAG8Q99932 426 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-208ENST00000367256 GSN-AS1Q9NRJ2 163 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 FRMPD3Q5JV73 1810 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 RND2P52198 227 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 MRPL52Q86TS9 123 aaKnown RBP6.29□□□□□ -1.4
SYNE1-208ENST00000367256 FOXI3A8MTJ6 420 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-208ENST00000367256 CA1P00915 261 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-208ENST00000367256 UNQ5815/PRO19632Q6UWF5 114 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 SEPSECSQ9HD40 501 aaKnown RBP6.29□□□□□ -1.4
SYNE1-208ENST00000367256 KLHDC2Q9Y2U9 406 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 SF3B6Q9Y3B4 125 aaKnown RBP6.29□□□□□ -1.4
SYNE1-208ENST00000367256 NAV3Q8IVL0 2385 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 PPIAL4EA0A075B759 164 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 PPIAL4DF5H284 164 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 C1QL1O75973 258 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 PPIAL4FP0DN26 164 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 MC5RP33032 325 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 TMEM170BQ5T4T1 132 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 SHISA5Q8N114 240 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 TMEM171Q8WVE6 324 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 PPIAL4AQ9Y536 164 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 A0A1W2PQM1 296 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 OR2H2O95918 312 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 P2RY4P51582 365 aa6.29□□□□□ -1.4
SYNE1-208ENST00000367256 TNFRSF9Q07011 255 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms