RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SLC35B1P78383 322 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 SMIM21Q3B7S5 101 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 ZBTB34Q8NCN2 500 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 PXMP4Q9Y6I8 212 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 PROP1O75360 226 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 SPRNQ5BIV9 151 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 FAM214BQ7L5A3 538 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 CBLN4Q9NTU7 201 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 DMXL2Q8TDJ6 3036 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 SPRY3O43610 288 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 FOXH1O75593 365 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 CBLN1P23435 193 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 PAX5Q02548 391 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 PEAR1Q5VY43 1037 aaPredicted RBP10.08□□□□□ -0.8
CLIP3-201ENST00000360535 TMEM178AQ8NBL3 297 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 OPN3Q9H1Y3 402 aaPredicted RBP10.08□□□□□ -0.8
CLIP3-201ENST00000360535 GNG10P50151 68 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 ZNF90Q03938 601 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 ASPHD1Q5U4P2 390 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 TREML4Q6UXN2 200 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 HSD17B10Q99714 261 aaKnown RBP10.07□□□□□ -0.8
CLIP3-201ENST00000360535 ZDHHC11Q9H8X9 412 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 P0C879 139 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 DUTP33316 252 aaKnown RBP10.07□□□□□ -0.8
CLIP3-201ENST00000360535 ZNF83P51522 516 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 ZNF134P52741 427 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 ZNF718Q3SXZ3 478 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 ACTL10Q5JWF8 245 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 C9orf106Q8NAJ2 232 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 S1PR3Q99500 378 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 PYGO2Q9BRQ0 406 aa10.07□□□□□ -0.8
CLIP3-201ENST00000360535 TRBV20OR9-2A0A075B6H5 130 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 TMEM210A6NLX4 147 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 GATA2P23769 480 aaPredicted RBP10.06□□□□□ -0.8
CLIP3-201ENST00000360535 OR5I1Q13606 314 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 TGIF2LYQ8IUE0 185 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 OR5R1Q8NH85 324 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 OCC1Q8TAD7 63 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 Q8TCH9 128 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 MGST2Q99735 147 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 SEPSECSQ9HD40 501 aaKnown RBP10.06□□□□□ -0.8
CLIP3-201ENST00000360535 WDR83OSQ9Y284 106 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 FRMD6-AS1P0C7T7 363 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 INO80CQ6PI98 192 aaPredicted RBP10.06□□□□□ -0.8
CLIP3-201ENST00000360535 CENPVQ7Z7K6 275 aaPredicted RBP10.06□□□□□ -0.8
CLIP3-201ENST00000360535 MOGAT3Q86VF5 341 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 OR4P4Q8NGL7 312 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 SFRP2Q96HF1 295 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 PARD6GQ9BYG4 376 aaPredicted RBP10.06□□□□□ -0.8
CLIP3-201ENST00000360535 GCM1Q9NP62 436 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 FKBP11Q9NYL4 201 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 PIEZO2Q9H5I5 2752 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 A8MWP6 167 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 ACSF3Q4G176 576 aaPredicted RBP10.06□□□□□ -0.8
CLIP3-201ENST00000360535 Q6ZT83 130 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 CISD2Q8N5K1 135 aaKnown RBP10.06□□□□□ -0.8
CLIP3-201ENST00000360535 MS4A10Q96PG2 267 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 TMEM140Q9NV12 185 aa10.06□□□□□ -0.8
CLIP3-201ENST00000360535 TANC2Q9HCD6 1990 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 EREGO14944 169 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 GGCTO75223 188 aaKnown RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 CD59P13987 128 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 ADMP35318 185 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 MOB3BQ86TA1 216 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 LYG1Q8N1E2 194 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 FDCSPQ8NFU4 85 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 ZNRD1Q9P1U0 126 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 DSCAMO60469 2012 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 SRP14P37108 136 aaKnown RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 TCL1AP56279 114 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 RAB4BP61018 213 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 EIF4EBP1Q13541 118 aaPredicted RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 HLA-DRB5Q30154 266 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 MORN2Q502X0 79 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 TEX38Q6PEX7 206 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 DUX4L9Q6RFH8 374 aaPredicted RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 ZNF705AQ6ZN79 300 aaPredicted RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 FAM216AQ8WUB2 273 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 ACY3Q96HD9 319 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 FAM103A1Q9BTL3 118 aaKnown RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 LRFN3Q9BTN0 628 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 HES4Q9HCC6 221 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 YTHDF2Q9Y5A9 579 aaKnown RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 PDE6DO43924 150 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 WNT2P09544 360 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 RPL29P47914 159 aaKnown RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 RPL31P62899 125 aaKnown RBP10.05□□□□□ -0.8
CLIP3-201ENST00000360535 BATFQ16520 125 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 WDR31Q8NA23 367 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 OR10G8Q8NGN5 311 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 GUCD1Q96NT3 240 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 GGTLC1Q9BX51 225 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 PRO3102Q9H379 93 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 ENY2Q9NPA8 101 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 TCF19Q9Y242 345 aa10.05□□□□□ -0.8
CLIP3-201ENST00000360535 M0R1B8 84 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 HPRT1P00492 218 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 KIR2DL2P43627 348 aaPredicted RBP10.04□□□□□ -0.8
CLIP3-201ENST00000360535 C1orf229Q6ZS94 237 aaPredicted RBP10.04□□□□□ -0.8
CLIP3-201ENST00000360535 Q8N7P7 452 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 168.1 ms