RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 LIME1Q9H400 295 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 Q9N2K0 584 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 FBLN5Q9UBX5 448 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 USP24Q9UPU5 2620 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 SNAI2O43623 268 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 NRASP01111 189 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 HRASP01112 189 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 CTXN2P0C2S0 81 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 PDLIM4P50479 330 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 TCTAP57738 103 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 QRFPP83859 136 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 PTX4Q96A99 478 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 HSPB7Q9UBY9 170 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 THBDP07204 575 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 TSPOP30536 169 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 SAMD13Q5VXD3 122 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 C1orf147Q96MC9 270 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-203ENST00000354674 CRIM1Q9NZV1 1036 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 TP53TG3Q9ULZ0 132 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 SLC45A2Q9UMX9 530 aa8.45□□□□□ -1.06
SYNE1-203ENST00000354674 TIMM8BQ9Y5J9 83 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-203ENST00000354674 KALRNO60229 2985 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 ATRXP46100 2492 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 CD300LBA8K4G0 201 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 YPEL1O60688 119 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 HIST1H1DP16402 221 aaKnown RBP8.44□□□□□ -1.06
SYNE1-203ENST00000354674 IL13RA2Q14627 380 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 KISS1Q15726 138 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 C1QL2Q7Z5L3 287 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 EMG1Q92979 244 aaKnown RBP8.44□□□□□ -1.06
SYNE1-203ENST00000354674 TMEM186Q96B77 213 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 YPEL2Q96QA6 119 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 TMEM59Q9BXS4 323 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 ACACBO00763 2458 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 POLEQ07864 2286 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 OR7C2O60412 319 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 BPNT1O95861 308 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 NBEAP1P0C6P0 100 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 CRISP2P16562 243 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 S100GP29377 79 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 RANP62826 216 aaKnown RBP8.44□□□□□ -1.06
SYNE1-203ENST00000354674 PNRC1Q12796 327 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-203ENST00000354674 ZNF266Q14584 549 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 CNN3Q15417 329 aaKnown RBP8.44□□□□□ -1.06
SYNE1-203ENST00000354674 MBNL2Q5VZF2 373 aaKnown RBP8.44□□□□□ -1.06
SYNE1-203ENST00000354674 SLC25A40Q8TBP6 338 aa8.44□□□□□ -1.06
SYNE1-203ENST00000354674 TBL2Q9Y4P3 447 aaKnown RBP8.44□□□□□ -1.06
SYNE1-203ENST00000354674 IGKV1-27A0A075B6S5 117 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 TRAV39A0A0B4J263 110 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 IQCF6A8MYZ5 107 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 H0Y8G0 127 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 ZNF737O75373 536 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 FUT6P51993 359 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 LINC00310P59036 64 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 ASCL4Q6XD76 172 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 H1FOOQ8IZA3 346 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-203ENST00000354674 TMEM252Q8N6L7 170 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 SGMS2Q8NHU3 365 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 KCNG3Q8TAE7 436 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 GPR146Q96CH1 333 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 SCGB3A2Q96PL1 93 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 MAP1BP46821 2468 aaKnown RBP8.43□□□□□ -1.06
SYNE1-203ENST00000354674 TRAV26-1A0A087WT03 109 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 M0R1B8 84 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 CORTO00230 105 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 TMEM50AO95807 157 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 TOMM40O96008 361 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 GYPAP02724 150 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 KITLGP21583 273 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 UCP1P25874 307 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 SELENOVP59797 346 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 Q56UQ5 140 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 SPIN3Q5JUX0 258 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 LHFPL2Q6ZUX7 228 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 KLF14Q8TD94 323 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-203ENST00000354674 RNASE6Q93091 150 aaKnown RBP8.43□□□□□ -1.06
SYNE1-203ENST00000354674 MCRIP2Q9BUT9 160 aaKnown RBP8.43□□□□□ -1.06
SYNE1-203ENST00000354674 FGF23Q9GZV9 251 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-203ENST00000354674 FNDC4Q9H6D8 234 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-203ENST00000354674 SLC25A22Q9H936 323 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 MPC1Q9Y5U8 109 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 TMEM14DPA8MWL7 114 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 MMP23AO75900 390 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 TFF3Q07654 80 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 PSG7Q13046 419 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 CDSNQ15517 529 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 ZNF726P1Q15940 193 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 CEACAM21Q3KPI0 293 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 SPATA46Q5T0L3 261 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 ASPHD1Q5U4P2 390 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 OR8I2Q8N0Y5 310 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 LHX4Q969G2 390 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 SMIM12Q96EX1 92 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 DERL1Q9BUN8 251 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 THYN1Q9P016 225 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 NAT8Q9UHE5 227 aa8.43□□□□□ -1.06
SYNE1-203ENST00000354674 TRAV30A0A087WSZ9 112 aa8.42□□□□□ -1.06
SYNE1-203ENST00000354674 NUDT3O95989 172 aa8.42□□□□□ -1.06
SYNE1-203ENST00000354674 CD40P25942 277 aa8.42□□□□□ -1.06
SYNE1-203ENST00000354674 PRDX4Q13162 271 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms