RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 RND2P52198 227 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 KIAA0141Q14154 515 aaPredicted RBP12.69□□□□□ -0.38
UPF3B-202ENST00000345865 TREML4Q6UXN2 200 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 LYG1Q8N1E2 194 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 Q8NA96 180 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 RHOVQ96L33 236 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 DIRC2Q96SL1 478 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 TMEM242Q9NWH2 141 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 TP53TG5Q9Y2B4 290 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 RELNP78509 3460 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 DPRXA6NFQ7 191 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 PAGE4O60829 102 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 IQCF2Q8IXL9 164 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 CISD2Q8N5K1 135 aaKnown RBP12.68□□□□□ -0.38
UPF3B-202ENST00000345865 NUP37Q8NFH4 326 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 OR4S2Q8NH73 311 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 ZCCHC14Q8WYQ9 949 aaKnown RBP12.68□□□□□ -0.38
UPF3B-202ENST00000345865 MS4A5Q9H3V2 200 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 SMCO3A2RU48 225 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 C17orf112F2Z3M2 114 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 CLDN34H7C241 214 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 FCN3O75636 299 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 YIF1AO95070 293 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 COL8A2P25067 703 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 CDC34P49427 236 aaPredicted RBP12.68□□□□□ -0.38
UPF3B-202ENST00000345865 MRPS11P82912 194 aaKnown RBP12.68□□□□□ -0.38
UPF3B-202ENST00000345865 OR4A47Q6IF82 309 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 CYP2G1PQ6ZSU1 146 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 WFDC8Q8IUA0 241 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 OR4F5Q8NH21 305 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 OR4F4Q96R69 305 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 PARLQ9H300 379 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 SH3BGRL2Q9UJC5 107 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 PKDREJQ9NTG1 2253 aa12.68□□□□□ -0.38
UPF3B-202ENST00000345865 C15orf61A6NNL5 157 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 MKRN2OSH3BPM6 223 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 CLN5O75503 358 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 KBTBD11O94819 623 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 TRGC2P03986 189 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 THBDP07204 575 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 NPPCP23582 126 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 NBL1P41271 181 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 KIR2DS2P43631 304 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 ADIPOQQ15848 244 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 MGST2Q99735 147 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 LINC00574Q9H8X3 128 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 PATZ1Q9HBE1 687 aaKnown RBP12.67□□□□□ -0.38
UPF3B-202ENST00000345865 IDI2-AS1Q9NZ38 188 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 NAT8Q9UHE5 227 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 SEC14L6B5MCN3 397 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 TMEM250H0YL14 139 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 C16orf97H3BN30 126 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 TMPRSS3P57727 454 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 ADIRFQ15847 76 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 TMEM241Q24JQ0 296 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 ACOT6Q3I5F7 207 aaPredicted RBP12.67□□□□□ -0.38
UPF3B-202ENST00000345865 TEX36Q5VZQ5 186 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 NANPQ8TBE9 248 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 MANBALQ9NQG1 85 aa12.67□□□□□ -0.38
UPF3B-202ENST00000345865 CEP295Q9C0D2 2601 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 IFITM10A6NMD0 228 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 TMPRSS2O15393 492 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 S100A8P05109 93 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 TNFSF4P23510 183 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 RPL23P62829 140 aaKnown RBP12.66□□□□□ -0.38
UPF3B-202ENST00000345865 TMEM108Q6UXF1 575 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-202ENST00000345865 FAM210BQ96KR6 192 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 TMEM14BQ9NUH8 114 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 DOK5Q9P104 306 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 TRGV8A0A0C4DH27 118 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 PRRG2O14669 202 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BKO60814 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 IGKV1-16P04430 117 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BJP06899 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 OR4A8P0C604 315 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BOP23527 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BBP33778 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 THBS3P49746 956 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BDP58876 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BCP62807 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 BSPH1Q075Z2 132 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST2H2BEQ16778 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-202ENST00000345865 CORO2AQ92828 525 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BHQ93079 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BNQ99877 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 HIST1H2BMQ99879 126 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 GGTLC1Q9BX51 225 aa12.66□□□□□ -0.38
UPF3B-202ENST00000345865 ZNF729A6NN14 1252 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-202ENST00000345865 CT45A6P0DMU7 189 aa12.65□□□□□ -0.38
UPF3B-202ENST00000345865 CT45A5P0DMU8 189 aa12.65□□□□□ -0.38
UPF3B-202ENST00000345865 CT45A7P0DMV0 189 aa12.65□□□□□ -0.38
UPF3B-202ENST00000345865 RPP30P78346 268 aaKnown RBP12.65□□□□□ -0.38
UPF3B-202ENST00000345865 ARSJQ5FYB0 599 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-202ENST00000345865 MIC13Q5XKP0 118 aa12.65□□□□□ -0.38
UPF3B-202ENST00000345865 SPNS3Q6ZMD2 512 aa12.65□□□□□ -0.38
UPF3B-202ENST00000345865 RPUSD1Q9UJJ7 312 aaKnown RBP12.65□□□□□ -0.38
UPF3B-202ENST00000345865 FOXA2Q9Y261 457 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-202ENST00000345865 SRRM4A7MD48 611 aaKnown RBP12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms