RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 OR3A4PP47883 348 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 CTHRC1Q96CG8 243 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 PGLYRP4Q96LB8 373 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 TRAV12-3A0A0B4J271 114 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 SMIM20Q8N5G0 67 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 OR51E1Q8TCB6 317 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 LOC107984156A0A0G2JMH3 177 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 COX5BP10606 129 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 SSBP2P81877 361 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ARL17AQ8IVW1 177 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 SSBP3Q9BWW4 388 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 CSTL1Q9H114 145 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 OR2A1Q8NGT9 310 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 J3QW42 95 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 PDLIM3Q53GG5 364 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 IL23AQ9NPF7 189 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 S1PR2O95136 353 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 FZD5Q13467 585 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 FAM166AQ6J272 317 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 NUFIP2Q7Z417 695 aaKnown RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 Q8IYB0 196 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 VKORC1L1Q8N0U8 176 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 NOXO1Q8NFA2 376 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 OR10G3Q8NGC4 313 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 A0A1B0GWB2 263 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 GATA2P23769 480 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 HHEXQ03014 270 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 GPR32P1Q8NGA4 272 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 HSPB9Q9BQS6 159 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ST6GALNAC2Q9UJ37 374 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ANAPC10Q9UM13 185 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 THSD7BQ9C0I4 1608 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 IGKV3D-11A0A0A0MRZ8 115 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 TRAV5A0A0B4J249 113 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 IGKV3D-20A0A0C4DH25 116 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 DUX1O43812 170 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 IGKV3-11P04433 115 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 SLAMF6Q96DU3 332 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 DUX5Q96PT3 197 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 SPCS1Q9Y6A9 102 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 PPP1CAP62136 330 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 MEF2CQ06413 473 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 HLA-DRB5Q30154 266 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ANKRD29Q8N6D5 301 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 LRP12Q9Y561 859 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 PITX3O75364 302 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 CRISP2P16562 243 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 GZMHP20718 246 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 P2RY2P41231 377 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 PLGLB1Q02325 96 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ARTNQ5T4W7 220 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 NRN1Q9NPD7 142 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 C19orf25Q9UFG5 118 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 CACNA1AO00555 2505 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 IGFBP2P18065 325 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 LYSMD4Q5XG99 296 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 C1QL2Q7Z5L3 287 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 DUX4L9Q6RFH8 374 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 CYP2G1PQ6ZSU1 146 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 DOK3Q7L591 496 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 OR1L6Q8NGR2 347 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 HINT3Q9NQE9 182 aaKnown RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 COLQQ9Y215 455 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ODAMA1E959 279 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 GPR183P32249 361 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 TBC1D28Q2M2D7 210 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ZNF718Q3SXZ3 478 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 CLUHP3Q96NS8 147 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 TRAV30A0A087WSZ9 112 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 MYOD1P15172 320 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 PAX2Q02962 417 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 PBOV1Q9GZY1 135 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 ZNF257Q9Y2Q1 563 aa3.05□□□□□ -1.92
SYNE1-201ENST00000341594 FCN1O00602 326 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 COX5AP20674 150 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 FUT7Q11130 342 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 OR52N5Q8NH56 324 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 A0A0G2JMM0 328 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 A0A1W2PPB8 328 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 KIR3DP1A8MWS1 328 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 LINC00869P0C866 280 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 DLX1P56177 255 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 CLRN1P58418 232 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 PFN3P60673 137 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 SF3B5Q9BWJ5 86 aaKnown RBP3.04□□□□□ -1.92
SYNE1-201ENST00000341594 CRIM1Q9NZV1 1036 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 UBR5O95071 2799 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-201ENST00000341594 PPIAL4GP0DN37 164 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 DYNLT3P51808 116 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 TMEM91Q6ZNR0 172 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 OR4P4Q8NGL7 312 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 LOXL4Q96JB6 756 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 LAMTOR2Q9Y2Q5 125 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 CR1P17927 2039 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 DPM2O94777 84 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 LIM2P55344 173 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 ADTRPQ96IZ2 230 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 EDA2RQ9HAV5 297 aa3.04□□□□□ -1.92
SYNE1-201ENST00000341594 LINC00527Q9UJ94 153 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms