RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 GSN-AS1Q9NRJ2 163 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 TGIF2-C20orf24A0A0A6YYL0 155 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 LOC107984156A0A0G2JMH3 177 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 ARL17AQ8IVW1 177 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 OR1P1Q8NH06 330 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 WFIKKN1Q96NZ8 548 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 SOX21Q9Y651 276 aaPredicted RBP8.65□□□□□ -1.02
CHD3-201ENST00000330494 SRCAPQ6ZRS2 3230 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 SIP14410 1827 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 KIAA2026Q5HYC2 2103 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 MOSP00540 346 aa8.65□□□□□ -1.02
CHD3-201ENST00000330494 CENPVQ7Z7K6 275 aaPredicted RBP8.65□□□□□ -1.02
CHD3-201ENST00000330494 CORTO00230 105 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 IGLV3-19P01714 112 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 APOBEC3AP31941 199 aaPredicted RBP8.65□□□□□ -1.03
CHD3-201ENST00000330494 CFHR1Q03591 330 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 TNFRSF9Q07011 255 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 WDR25Q64LD2 544 aaPredicted RBP8.65□□□□□ -1.03
CHD3-201ENST00000330494 FAM216BQ8N7L0 139 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 WDYHV1Q96HA8 205 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 LYNX1G3V0Z9 82 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 LYNX1P0DP58 116 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 FAM3BP58499 235 aaPredicted RBP8.65□□□□□ -1.03
CHD3-201ENST00000330494 PGLYRP4Q96LB8 373 aa8.65□□□□□ -1.03
CHD3-201ENST00000330494 PLAURQ03405 335 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 NRIP2Q9BQI9 281 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 DEPPQ9NTK1 212 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 BTF3P20290 206 aaKnown RBP8.64□□□□□ -1.03
CHD3-201ENST00000330494 FHITP49789 147 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 SRSF6Q13247 344 aaKnown RBP8.64□□□□□ -1.03
CHD3-201ENST00000330494 PQLC2Q6ZP29 291 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 FADS6Q8N9I5 356 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 IMMP1LQ96LU5 166 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 CLEC7AQ9BXN2 247 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 CFDP00746 253 aaPredicted RBP8.64□□□□□ -1.03
CHD3-201ENST00000330494 MAJINQ3KP22 176 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 DNLZQ5SXM8 178 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 C10orf128Q5T292 105 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 CD200R1LQ6Q8B3 271 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 ACP7Q6ZNF0 438 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 OR10J6PQ8NGY7 276 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 FLVCR1-AS1Q8TAF5 88 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 IL19Q9UHD0 177 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 LIPFP07098 398 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 SEC11BP0C7V7 166 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 PGA5P0DJD9 388 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 PRB4P10163 310 aaPredicted RBP8.64□□□□□ -1.03
CHD3-201ENST00000330494 TAF15Q92804 592 aaKnown RBP eCLIP8.64□□□□□ -1.03
CHD3-201ENST00000330494 SPRR3Q9UBC9 169 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 OTX1P32242 354 aaPredicted RBP8.64□□□□□ -1.03
CHD3-201ENST00000330494 MFAP2P55001 183 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 LRRC75BQ2VPJ9 315 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 TIMM23BQ5SRD1 257 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 ZNF343Q6P1L6 599 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 EBLN2Q6P2I7 272 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 UQCR10Q9UDW1 63 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 IGHV2OR16-5A0A0B4J2B6 119 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 TMEM106BQ9NUM4 274 aa8.64□□□□□ -1.03
CHD3-201ENST00000330494 DOCK7Q96N67 2140 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 AKAP6Q13023 2319 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 C7orf66A4D0T2 115 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 NMBP08949 121 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 CD24P25063 80 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 PSG7Q13046 419 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 MTURNQ8N3F0 131 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 SGMS2Q8NHU3 365 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 REPIN1Q9BWE0 567 aaKnown RBP8.63□□□□□ -1.03
CHD3-201ENST00000330494 CNOT1A5YKK6 2376 aaKnown RBP8.63□□□□□ -1.03
CHD3-201ENST00000330494 CEP250Q9BV73 2442 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 EGR1P18146 543 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 TMEM78Q5T7P6 136 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 MRPL14Q6P1L8 145 aaKnown RBP8.63□□□□□ -1.03
CHD3-201ENST00000330494 A0A1W2PRX2 142 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 TMEM189A5PLL7 270 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 LINC00587B1AMM8 73 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 PTGDSP41222 190 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 LHX2P50458 406 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 CLDN18P56856 261 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 MPTX1A8MV57 137 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 SS18L1O75177 396 aaPredicted RBP8.63□□□□□ -1.03
CHD3-201ENST00000330494 MMD2Q8IY49 270 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 OR11H4Q8NGC9 324 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 SSBP3Q9BWW4 388 aaPredicted RBP8.63□□□□□ -1.03
CHD3-201ENST00000330494 B9A039 149 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 BCL2P10415 239 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 ZNF708P17019 499 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 PCSK4Q6UW60 755 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 ST6GALNAC3Q8NDV1 305 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 OR4C13Q8NGP0 309 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 ELOVL5Q9NYP7 299 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 ZFP30Q9Y2G7 519 aa8.63□□□□□ -1.03
CHD3-201ENST00000330494 TMEM14DPA8MWL7 114 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 ATP5G2Q06055 141 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 ZNF345Q14585 488 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 TMEM187Q14656 261 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 FAM57AQ8TBR7 257 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 NEU1Q99519 415 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 HERVK_113P61574 105 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 ZNF660Q6AZW8 331 aaPredicted RBP8.62□□□□□ -1.03
CHD3-201ENST00000330494 ATOH7Q8N100 152 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms