RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TLCD1Q96CP7 247 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 FXYD5Q96DB9 178 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 SMIM19Q96E16 107 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 ZHX1-C8orf76Q96EF9 292 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 IP6K3Q96PC2 410 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 OR2A7Q96R45 310 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 UGT2B28Q9BY64 529 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 FBXL15Q9H469 300 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 NIT2Q9NQR4 276 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 GUCA1BQ9UMX6 200 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 TP53TG1Q9Y2A0 90 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 TBL2Q9Y4P3 447 aaKnown RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 AHCTF1Q8WYP5 2266 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 UTP20O75691 2785 aaKnown RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 SDK2Q58EX2 2172 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 PRR14LQ5THK1 2151 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 USP9YO00507 2555 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 OTOGQ6ZRI0 2925 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 LRBAP50851 2863 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 FLNCQ14315 2725 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ITPR2Q14571 2701 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF236Q9UL36 1845 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 MED13LQ71F56 2210 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 IGHV3OR16-8A0A075B7F1 116 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 TRAV8-3A0A0A6YYJ7 113 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 GNG14A0A1W2PPG7 69 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 DAPL1A0PJW8 107 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 TMEM72A0PK05 275 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 PQLC2LA1A4F0 135 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 OR6C70A6NIJ9 312 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 F5H5T6 163 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 H0Y980 276 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 I3L521 148 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 M0QZ92 97 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 SLC16A4O15374 487 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 GYG2O15488 501 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 RGS5O15539 181 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 DENRO43583 198 aaKnown RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 NSA2O95478 260 aaKnown RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 EPPINO95925 133 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 CA2P00918 260 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 IGKV1-39P01597 117 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 TNNC2P02585 160 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 IGKV1D-39P04432 117 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 GYPCP04921 128 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 SERPINA6P08185 405 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 RBP1P09455 135 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 FBP1P09467 338 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 OR4E1P0C645 316 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 CECR9P0C854 216 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 CD36P16671 472 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 AKR1C4P17516 323 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ATF1P18846 271 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 PRTN3P24158 256 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 CRABP1P29762 137 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 OMPP47874 163 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 AQP4P55087 323 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 RAB25P57735 213 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 RPL26P61254 145 aaKnown RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 DYNLL1P63167 89 aaKnown RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 MLLT11Q13015 90 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 FADDQ13158 208 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 APOFQ13790 326 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 FAM53BQ14153 422 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF235Q14590 738 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF846Q147U1 533 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 UAP1Q16222 522 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 SSX1Q16384 188 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 GOLGA7BQ2TAP0 167 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 HLA-DRB5Q30154 266 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 Q5BKY6 102 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 PDZD11Q5EBL8 140 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 DCUN1D2Q6PH85 259 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 SCIMPQ6UWF3 145 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 SPNS3Q6ZMD2 512 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 S100A7AQ86SG5 101 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 LINC00596Q86U02 117 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 SNX29P2Q8IUI4 249 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 MUC15Q8N387 334 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 GATD1Q8NB37 220 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 TMEM35BQ8NCS4 154 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 OR52E4Q8NGH9 312 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 OR5M1Q8NGP8 315 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 OR6K3Q8NGY3 331 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 OR10J5Q8NHC4 309 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 STOML3Q8TAV4 291 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 FAM57AQ8TBR7 257 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 KLF14Q8TD94 323 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 MAFIPQ8WZ33 124 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 C12orf43Q96C57 262 aaKnown RBP1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ISOC1Q96CN7 298 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 CNBD2Q96M20 576 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 KCTD7Q96MP8 289 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 LINC01587Q99440 93 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 PFDN5Q99471 154 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 C1orf50Q9BV19 199 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 TBL1XR1Q9BZK7 514 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 SLC22A4Q9H015 551 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ARL6Q9H0F7 186 aa1.75□□□□□ -2.13
HMGB1-201ENST00000326004 ALX4Q9H161 411 aaPredicted RBP1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms