RNA–Protein interactions for RNA: ENST00000295718.6

PTPRN-201, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRN, Length 3,784 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-201ENST00000295718 ZNF114Q8NC26 417 aa12.17□□□□□ -0.46
PTPRN-201ENST00000295718 H1FXQ92522 213 aaKnown RBP12.17□□□□□ -0.46
PTPRN-201ENST00000295718 SMIM21Q3B7S5 101 aa12.17□□□□□ -0.46
PTPRN-201ENST00000295718 TDRG1Q3Y452 100 aa12.17□□□□□ -0.46
PTPRN-201ENST00000295718 LINC01551Q86U37 167 aa12.17□□□□□ -0.46
PTPRN-201ENST00000295718 Q8IYB0 196 aa12.17□□□□□ -0.46
PTPRN-201ENST00000295718 ZNF645Q8N7E2 425 aa12.17□□□□□ -0.46
PTPRN-201ENST00000295718 POLR3KQ9Y2Y1 108 aaPredicted RBP12.17□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A10PA6NDY2 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A18PA6NE21 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A16PA6NEW6 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 OOEPA6NGQ2 149 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A20PA6NIJ5 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A8PA6NJQ4 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A7PA6NKC0 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A22PA8MWA6 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A12PA8MX19 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A5PA8MXJ8 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A23PA8MXZ1 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 CXorf1O96002 111 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 IGLV3-19P01714 112 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A15PP0C7V4 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A13PP0C7W8 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A14PP0C7W9 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 FAM90A24PP0C7X0 464 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 SELENOVP59797 346 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 ZNF585BQ52M93 769 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 TMEM208Q9BTX3 173 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 OPN3Q9H1Y3 402 aaPredicted RBP12.16□□□□□ -0.46
PTPRN-201ENST00000295718 SH2D2AQ9NP31 389 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 EML6Q6ZMW3 1958 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 IGLV3-32A0A0A0MS00 114 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 M0QZK8 103 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 NUPR1O60356 82 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 GGCTO75223 188 aaKnown RBP12.16□□□□□ -0.46
PTPRN-201ENST00000295718 NPY1RP25929 384 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 REG1BP48304 166 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 UBE2L3P68036 154 aaKnown RBP12.16□□□□□ -0.46
PTPRN-201ENST00000295718 MS4A5Q9H3V2 200 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 CDKN1AP38936 164 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 SPATA31B1PQ5VZV4 182 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 TMEM42Q69YG0 159 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 KLHDC1Q8N7A1 406 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 ZNF835Q9Y2P0 537 aa12.16□□□□□ -0.46
PTPRN-201ENST00000295718 C2orf16Q68DN1 1984 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 TRGV5A0A0B4J1U4 118 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 PSPNO60542 156 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 FAM201AQ5SY85 155 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 STUMQ69YW2 141 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 GGNQ86UU5 652 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 TTTY12Q9BZ98 90 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 TWSG1Q9GZX9 223 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 TMEM242Q9NWH2 141 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 TRAV1-1A0A0B4J248 108 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 ATP1A1-AS1Q5TC04 95 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 WDR54Q9H977 334 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 WIPI2Q9Y4P8 454 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 CREBBPQ92793 2442 aa12.15□□□□□ -0.46
PTPRN-201ENST00000295718 KLF7O75840 302 aaPredicted RBP12.15□□□□□ -0.47
PTPRN-201ENST00000295718 ORM2P19652 201 aa12.15□□□□□ -0.47
PTPRN-201ENST00000295718 GPR6P46095 362 aaPredicted RBP12.15□□□□□ -0.47
PTPRN-201ENST00000295718 FOXA3P55318 350 aaPredicted RBP12.15□□□□□ -0.47
PTPRN-201ENST00000295718 TEPPQ6URK8 271 aa12.15□□□□□ -0.47
PTPRN-201ENST00000295718 TCTEX1D1Q8N7M0 179 aa12.15□□□□□ -0.47
PTPRN-201ENST00000295718 OR13A1Q8NGR1 328 aa12.15□□□□□ -0.47
PTPRN-201ENST00000295718 KCNIP2Q9NS61 270 aa12.15□□□□□ -0.47
PTPRN-201ENST00000295718 MED12LQ86YW9 2145 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 ZNF83P51522 516 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 CENPWQ5EE01 88 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 LCN12Q6JVE5 192 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 LHFPL4Q7Z7J7 247 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 SAP25Q8TEE9 199 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 COMMD5Q9GZQ3 224 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 DNPH1O43598 174 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 ZNF718Q3SXZ3 478 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 ZNRF1Q8ND25 227 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 BET1LQ9NYM9 111 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 ZNF503-AS2A6NEH8 195 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 CLDN14O95500 239 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 Q6ZVH6 145 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 RBM14Q96PK6 669 aaKnown RBP12.14□□□□□ -0.47
PTPRN-201ENST00000295718 DIRC2Q96SL1 478 aa12.14□□□□□ -0.47
PTPRN-201ENST00000295718 EYSQ5T1H1 3165 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 TIMP3P35625 211 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 SOX8P57073 446 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 PAFAH1B2P68402 229 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 SLC35E1Q96K37 410 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 WASHC3Q9Y3C0 194 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 A0A1W2PRD5 423 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 A0A1W2PRF3 423 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 A0A1W2PRM7 423 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 M0R1B8 84 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 COX7A2P2O60397 106 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 MYOD1P15172 320 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 TAS2R45P59539 299 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 FBXW9Q5XUX1 488 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 PPP1R32Q7Z5V6 425 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 POM121L2Q96KW2 1035 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 NPVFQ9HCQ7 196 aa12.13□□□□□ -0.47
PTPRN-201ENST00000295718 F2Z2F3 143 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms