RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 VWCEQ96DN2 955 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 AQP10Q96PS8 301 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 A0A0G2JLM5 398 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 CEACAM18A8MTB9 384 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 SRSF9Q13242 221 aaKnown RBP eCLIP10.91□□□□□ -0.66
USP40-201ENST00000251722 TMEM91Q6ZNR0 172 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 SEPSECSQ9HD40 501 aaKnown RBP10.91□□□□□ -0.66
USP40-201ENST00000251722 DLL3Q9NYJ7 618 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 A1L4Q6 167 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 CD74P04233 296 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 INSL4Q14641 139 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 OR2K2Q8NGT1 345 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 FAM168AQ92567 244 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 SSBP4Q9BWG4 385 aaPredicted RBP10.9□□□□□ -0.66
USP40-201ENST00000251722 GTSF1LQ9H1H1 148 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 TMEM106BQ9NUM4 274 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 ARID2Q68CP9 1835 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 NPIPB11E5RHQ5 1161 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BKO60814 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BJP06899 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 IL11P20809 199 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BOP23527 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 COL8A1P27658 744 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BBP33778 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BDP58876 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BCP62807 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST2H2BEQ16778 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BHQ93079 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BNQ99877 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BMQ99879 126 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 PAXXQ9BUH6 204 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 TMEM222Q9H0R3 208 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 TFPI2P48307 235 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 SCGB1D4Q6XE38 83 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 KLHDC2Q9Y2U9 406 aa10.9□□□□□ -0.66
USP40-201ENST00000251722 SPAG17Q6Q759 2223 aa10.9□□□□□ -0.67
USP40-201ENST00000251722 NKX2-6A6NCS4 301 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 HSPE1P61604 102 aaKnown RBP10.89□□□□□ -0.67
USP40-201ENST00000251722 TMEM70Q9BUB7 260 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 LOC107984156A0A0G2JMH3 177 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 RBFOX2O43251 390 aaKnown RBP eCLIP10.89□□□□□ -0.67
USP40-201ENST00000251722 ZNF205O95201 554 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 COX6CP09669 75 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 RRN3P1Q2M238 152 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 ARL17AQ8IVW1 177 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 MRPL24Q96A35 216 aaKnown RBP10.89□□□□□ -0.67
USP40-201ENST00000251722 MRPL18Q9H0U6 180 aaKnown RBP10.89□□□□□ -0.67
USP40-201ENST00000251722 RBKSQ9H477 322 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 IGKV1D-42A0A075B6H8 117 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 EREGO14944 169 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 ZNF146Q15072 292 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 POU2AF1Q16633 256 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 GUCD1Q96NT3 240 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 SSBP3Q9BWW4 388 aaPredicted RBP10.89□□□□□ -0.67
USP40-201ENST00000251722 TMEM56-RWDD3S4R434 201 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 TIAF1O95411 115 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 NPSP0C0P6 89 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 GBGT1Q8N5D6 347 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 DCTN5Q9BTE1 182 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 SPINK4O60575 86 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 SPINK9Q5DT21 86 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 HEPN1Q6WQI6 88 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 TMEM190Q8WZ59 177 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 HILPDAQ9Y5L2 63 aa10.89□□□□□ -0.67
USP40-201ENST00000251722 IL4P05112 153 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 NANOS3P60323 173 aaKnown RBP10.88□□□□□ -0.67
USP40-201ENST00000251722 PQLC2Q6ZP29 291 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 QTRT1Q9BXR0 403 aaKnown RBP10.88□□□□□ -0.67
USP40-201ENST00000251722 REG4Q9BYZ8 158 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 LEPROTL1O95214 131 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 EFEMP2O95967 443 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 CD8AP01732 235 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 HKR1P10072 659 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 MAS1LP35410 378 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 Q96M66 194 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 SDHCQ99643 169 aaPredicted RBP10.88□□□□□ -0.67
USP40-201ENST00000251722 SLC25A33Q9BSK2 321 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 H0YL77 283 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 IGHV3-13P01766 116 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 IGHV3-7P01780 117 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 PF4P02776 101 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 PRSS1P07477 247 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 LINC00869P0C866 280 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 CD59P13987 128 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 NMUP48645 174 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 MRPL32Q9BYC8 188 aaKnown RBP10.88□□□□□ -0.67
USP40-201ENST00000251722 NPIPB6E9PJ23 425 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 ATP1A1-AS1Q5TC04 95 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 OSR1Q8TAX0 266 aaPredicted RBP10.88□□□□□ -0.67
USP40-201ENST00000251722 DDB2Q92466 427 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 AQP3Q92482 292 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 WDYHV1Q96HA8 205 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 C16orf92Q96LL3 132 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 PRDM13Q9H4Q3 707 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 UFC1Q9Y3C8 167 aa10.88□□□□□ -0.67
USP40-201ENST00000251722 hCG_38984A0A1B0GV85 526 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 TM4SF20Q53R12 229 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 AMMECR1LQ6DCA0 310 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 TMEM116Q8NCL8 245 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms