RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CCL2P13500 99 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GABRA2P47869 451 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 LHX2P50458 406 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 JOSD1Q15040 202 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF468Q5VIY5 522 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM14EPQ6UXP3 125 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GFRALQ6UXV0 394 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GCNT2Q8N0V5 402 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 NECAP1Q8NC96 275 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 RNASEH2CQ8TDP1 164 aaKnown RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM170AQ8WVE7 144 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TTTY12Q9BZ98 90 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 PARLQ9H300 379 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF552Q9H707 407 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 AKIRIN1Q9H9L7 192 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 HEYLQ9NQ87 328 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 OR1A1Q9P1Q5 309 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 WIPI2Q9Y4P8 454 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ASXL3Q9C0F0 2248 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 A0A0G2JMM0 328 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 A0A1W2PPB8 328 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 A0A1W2PRS3 328 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 KIR3DP1A8MWS1 328 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 M0QZK8 103 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TCAPO15273 167 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TIMM8AO60220 97 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GGCTO75223 188 aaKnown RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM50AO95807 157 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GRPP07492 148 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 RD3LP0DJH9 198 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 OR3A1P47881 315 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 PRRX1P54821 245 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 CLDN18P56856 261 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TPPP2P59282 170 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF816Q0VGE8 651 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 WDR25Q64LD2 544 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 MDP1Q86V88 176 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ODF3L1Q8IXM7 274 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM160Q9NX00 188 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GNG12Q9UBI6 72 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TP53TG5Q9Y2B4 290 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TRAPPC1Q9Y5R8 145 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 NBEAQ8NFP9 2946 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GTF3C1Q12789 2109 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GON4LQ3T8J9 2241 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 TRGV5A0A0B4J1U4 118 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 IGKV1-6A0A0C4DH72 117 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 A0A0U1RQK1 487 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF320A2RRD8 509 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF705FA8MVS1 300 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 IFNL4K9M1U5 179 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 CXorf1O96002 111 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF705DP0CH99 300 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF705BP0CI00 300 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 THBS3P49746 956 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 RAB7AP51149 207 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 CNN1P51911 297 aaKnown RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ERVS71-1P61550 626 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 PMP22Q01453 160 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 GAMTQ14353 236 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 RTL8BQ17RB0 113 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 IGFL3Q6UXB1 125 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 C20orf204Q6ZNR8 217 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 CENPVQ7Z7K6 275 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-214ENST00000637038 SCCPDHQ8NBX0 429 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 OR5T1Q8NG75 326 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 OR4X1Q8NH49 305 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 DMXL2Q8TDJ6 3036 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF488Q96MN9 340 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BLQ99880 126 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 CSMD1Q96PZ7 3565 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 UNC13CQ8NB66 2214 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 CHD3Q12873 2000 aaKnown RBP3.34□□□□□ -1.87
SCN1A-214ENST00000637038 PAGE4O60829 102 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 IGKV1-5P01602 117 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 SOD3P08294 240 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 STAG3L3P0CL85 134 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 RHOBP62745 196 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 RPL23P62829 140 aaKnown RBP3.34□□□□□ -1.87
SCN1A-214ENST00000637038 GNB2P62879 340 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 PAFAH1B2P68402 229 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 ARG2P78540 354 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF146Q15072 292 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF718Q3SXZ3 478 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 TM4SF20Q53R12 229 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 SPINK14Q6IE38 97 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 LINC00696Q6ZRV3 163 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 C17orf78Q8N4C9 275 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM251Q8N6I4 163 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM37Q8WXS4 190 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 BCL2L2Q92843 193 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-214ENST00000637038 R3HDM4Q96D70 268 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 ADTRPQ96IZ2 230 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 SFXN3Q9BWM7 321 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 HPRT1P00492 218 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 TYMSP04818 313 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 GZMHP20718 246 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 CD1BP29016 333 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 OR10J1P30954 320 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms