RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 LYPD6BQ8NI32 183 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 PIGXQ8TBF5 258 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF675Q8TD23 568 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF418Q8TF45 676 aaPredicted RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 DCAKDQ8WVC6 231 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 CACNG8Q8WXS5 425 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 H1FXQ92522 213 aaKnown RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ANKRD7Q92527 254 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF75CPQ92670 426 aaPredicted RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 GHSRQ92847 366 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 LEAP2Q969E1 77 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 MRGPRFQ96AM1 343 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 TMIGD2Q96BF3 282 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ROPN1LQ96C74 230 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 PPCDCQ96CD2 204 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 LRRC39Q96DD0 335 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ZMYND19Q96E35 227 aaPredicted RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 GALNT14Q96FL9 552 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF317Q96PQ6 595 aaPredicted RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 OR2V2Q96R30 315 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 AMELYQ99218 206 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 SERPINI1Q99574 410 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 EBNA1BP2Q99848 306 aaKnown RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 DHRS9Q9BPW9 319 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 SEC22CQ9BRL7 303 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ADAT1Q9BUB4 502 aaKnown RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 C20orf24Q9BUV8 137 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 GGTLC1Q9BX51 225 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 CDCA4Q9BXL8 241 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 OR2J1Q9GZK6 312 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 C20orf27Q9GZN8 174 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 DERL2Q9GZP9 239 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 SLIRPQ9GZT3 109 aaKnown RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 FAM192AQ9GZU8 254 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 CHRNA10Q9GZZ6 450 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 SLC38A1Q9H2H9 487 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 LYRM4Q9HD34 91 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 MED4Q9NPJ6 270 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 DNAJC27Q9NZQ0 273 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 TAAR3PQ9P1P4 343 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 OR5V1Q9UGF6 321 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF391Q9UJN7 358 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 FBXL3Q9UKT7 428 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 MCTS1Q9ULC4 181 aaKnown RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF443Q9Y2A4 671 aaPredicted RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 POLR1DQ9Y2S0 133 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 CAB39Q9Y376 341 aaPredicted RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 FAT3Q8TDW7 4589 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 APOBP04114 4563 aaKnown RBP0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 VPS13DQ5THJ4 4388 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 DNAH17Q9UFH2 4485 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 DNAH11Q96DT5 4516 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 HERC1Q15751 4861 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHV3OR16-8A0A075B7F1 116 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IGLV1-36A0A0B4J1U3 117 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHV3-43A0A0B4J1X8 118 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHV1-3A0A0C4DH29 117 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHV1-69-2A0A0G2JMI3 117 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHV7-4-1A0A0J9YVY3 117 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 A0A0J9YXV3 536 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 A0A1B0GWA3 101 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 A0A1W2PRG6 482 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 CLPSL1A2RUU4 121 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 C5orf49A4QMS7 147 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IZUMO1RA6ND01 250 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 A6NIN4 97 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 C16orf90A8MZG2 172 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 KRBOX1C9JBD0 128 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF878C9JN71 531 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 FTCDNL1E5RQL4 147 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 J3QRE1 110 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 M0R2N4 97 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 SIRPB1O00241 398 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 HMGN4O00479 90 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 TXNDC9O14530 226 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 AZIN1O14977 448 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 RER1O15258 196 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 DEFB4AO15263 64 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 EIF3HO15372 352 aaKnown RBP eCLIP0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 SOCS1O15524 211 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 AKR7A2O43488 359 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 SYNGR1O43759 233 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 SMIM24O75264 130 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 MRPL33O75394 65 aaKnown RBP0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 CCNB2O95067 398 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 S1PR2O95136 353 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 SNX4O95219 450 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 BRI3O95415 125 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 SOX14O95416 240 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 RAB36O95755 333 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 LY6G6CO95867 125 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 TRBV12-3P01733 135 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHV3-11P01762 117 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHMP01871 453 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 MT-ND4P03905 459 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 GYPBP06028 91 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 MMP7P09237 267 aaPredicted RBP0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 PGA4P0DJD7 388 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 PGA3P0DJD8 388 aa0.54□□□□□ -2.32
SMARCB1-209ENST00000635578 CTLA4P16410 223 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms