RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 LRRC10Q5BKY1 277 aa16.11■□□□□ 0.17
CHRNA4-209ENST00000627000 C10orf91Q5T1B1 145 aa16.11■□□□□ 0.17
CHRNA4-209ENST00000627000 ABCA4P78363 2273 aa16.11■□□□□ 0.17
CHRNA4-209ENST00000627000 FAM157AC9JC47 383 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 NQO2P16083 231 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 COL8A2P25067 703 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 THBS3P49746 956 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 DVL1P1P54792 670 aaPredicted RBP16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 TFF3Q07654 80 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 OR4S2Q8NH73 311 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 TMEM140Q9NV12 185 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 PMS2P5A8MQ11 134 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 SFTA3P0C7M3 94 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 KIR2DS2P43631 304 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 ERVK-16P61578 105 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 CCL20P78556 96 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 LRRC75BQ2VPJ9 315 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 HFEQ30201 348 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 PUSL1Q8N0Z8 303 aaKnown RBP16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 SCGB1C1Q8TD33 95 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 ITPR1Q14643 2758 aa16.1■□□□□ 0.17
CHRNA4-209ENST00000627000 UBE2L5PA0A1B0GUS4 154 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 PPIHO43447 177 aaKnown RBP16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 IFNA17P01571 189 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 RELBQ01201 579 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 GUK1Q16774 197 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 TMEM30BQ3MIR4 351 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 AKR1C8PQ5T2L2 129 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 SPSB3Q6PJ21 355 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 HEPN1Q6WQI6 88 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 OR4A16Q8NH70 328 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 CARHSP1Q9Y2V2 147 aaKnown RBP16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 PIEZO1Q92508 2521 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 CT45A6P0DMU7 189 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 CT45A5P0DMU8 189 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 CT45A7P0DMV0 189 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 S100A12P80511 92 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 TMEM204Q9BSN7 226 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 SEC11CQ9BY50 192 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 KAAG1Q9UBP8 84 aa16.09■□□□□ 0.17
CHRNA4-209ENST00000627000 PCP4L1A6NKN8 68 aa16.08■□□□□ 0.16
CHRNA4-209ENST00000627000 DAOP14920 347 aa16.08■□□□□ 0.16
CHRNA4-209ENST00000627000 HNF4GQ14541 408 aa16.08■□□□□ 0.16
CHRNA4-209ENST00000627000 AARDQ4LEZ3 155 aa16.08■□□□□ 0.16
CHRNA4-209ENST00000627000 CIB3Q96Q77 187 aaPredicted RBP16.08■□□□□ 0.16
CHRNA4-209ENST00000627000 WDR61Q9GZS3 305 aaKnown RBP16.08■□□□□ 0.16
CHRNA4-209ENST00000627000 VSIRQ9H7M9 311 aa16.08■□□□□ 0.16
CHRNA4-209ENST00000627000 FAM90A9PA6NNJ1 464 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 COMMD1Q8N668 190 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 OR10A7Q8NGE5 316 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 EIF5A2Q9GZV4 153 aaKnown RBP16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 BIN3Q9NQY0 253 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 LRBAP50851 2863 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 SNAPINO95295 136 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 SFTPCP11686 197 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 ADTRPQ96IZ2 230 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 RHOVQ96L33 236 aa16.07■□□□□ 0.16
CHRNA4-209ENST00000627000 TPRP12270 2363 aaKnown RBP16.06■□□□□ 0.16
CHRNA4-209ENST00000627000 ZNF98A6NK75 572 aa16.06■□□□□ 0.16
CHRNA4-209ENST00000627000 C15orf62A8K5M9 175 aa16.06■□□□□ 0.16
CHRNA4-209ENST00000627000 PPT1P50897 306 aa16.06■□□□□ 0.16
CHRNA4-209ENST00000627000 OR4A47Q6IF82 309 aa16.06■□□□□ 0.16
CHRNA4-209ENST00000627000 PLA2G5P39877 138 aa16.06■□□□□ 0.16
CHRNA4-209ENST00000627000 SPCS3P61009 180 aa16.06■□□□□ 0.16
CHRNA4-209ENST00000627000 TAF15Q92804 592 aaKnown RBP eCLIP16.06■□□□□ 0.16
CHRNA4-209ENST00000627000 HIVEP3Q5T1R4 2406 aa16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 LY6HO94772 140 aa16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 IGKV1-16P04430 117 aa16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 DLX6P56179 175 aa16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 B2MP61769 119 aa16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 DHRS7BQ6IAN0 325 aaPredicted RBP16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 OR10P1Q8NGE3 313 aa16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 SFT2D1Q8WV19 159 aa16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 RPRMQ9NS64 109 aa16.05■□□□□ 0.16
CHRNA4-209ENST00000627000 MYOD1P15172 320 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 SP5Q6BEB4 398 aaPredicted RBP16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 ZNF833PQ6ZTB9 187 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 RARRES2Q99969 163 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 PSMG3Q9BT73 122 aaPredicted RBP16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 MRPL20Q9BYC9 149 aaKnown RBP16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 SLC35D1Q9NTN3 355 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 OR8U8P0C7N1 319 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 UQCRFS1P47985 274 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 NPBWR1P48145 328 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 AKR1D1P51857 326 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 PEA15Q15121 130 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 TMEM155Q4W5P6 130 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 AVPI1Q5T686 147 aa16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 PARD6GQ9BYG4 376 aaPredicted RBP16.04■□□□□ 0.16
CHRNA4-209ENST00000627000 SRRM4A7MD48 611 aaKnown RBP16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 VDAC2P45880 294 aaPredicted RBP16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 REG1BP48304 166 aa16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 RAB13P51153 203 aa16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 DIAPH2-AS1Q14236 149 aa16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 LFNGQ8NES3 379 aa16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 OR52E5Q8NH55 327 aa16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 TMEM147Q9BVK8 224 aa16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 TCF19Q9Y242 345 aa16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 C15orf61A6NNL5 157 aa16.03■□□□□ 0.16
CHRNA4-209ENST00000627000 ARG1P05089 322 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms