RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 YPEL1O60688 119 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 SRSF7Q16629 238 aaKnown RBP eCLIP12.99□□□□□ -0.33
CPSF1-213ENST00000620219 HAGHQ16775 308 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 Q6ZRM9 215 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 OR9G1Q8NH87 305 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 YPEL2Q96QA6 119 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 MRPL20Q9BYC9 149 aaKnown RBP12.99□□□□□ -0.33
CPSF1-213ENST00000620219 TLNRD1Q9H1K6 362 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 KIAA1456Q9P272 454 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 CLEC2AQ6UVW9 174 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 UBAC2Q8NBM4 344 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 NEU4Q8WWR8 484 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-213ENST00000620219 PHYHIPLQ96FC7 376 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 C20orf24Q9BUV8 137 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 QTRT1Q9BXR0 403 aaKnown RBP12.98□□□□□ -0.33
CPSF1-213ENST00000620219 LPAR3Q9UBY5 353 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 RELNP78509 3460 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 LIPFP07098 398 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 ERHP84090 104 aaKnown RBP12.98□□□□□ -0.33
CPSF1-213ENST00000620219 TNFRSF9Q07011 255 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 STPG2Q8N412 459 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 UQCC1Q9NVA1 299 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 PLXNB1O43157 2135 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 DUTP33316 252 aaKnown RBP12.98□□□□□ -0.33
CPSF1-213ENST00000620219 TMEM88Q6PEY1 159 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 FAM222BQ8WU58 562 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 AIFM2Q9BRQ8 373 aa12.98□□□□□ -0.33
CPSF1-213ENST00000620219 J3QR06 171 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 KIR2DS2P43631 304 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 RSG1Q9BU20 258 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 PBDC1Q9BVG4 233 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 SSBP3Q9BWW4 388 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-213ENST00000620219 RPUSD1Q9UJJ7 312 aaKnown RBP12.97□□□□□ -0.33
CPSF1-213ENST00000620219 IGHV3-21A0A0B4J1V1 117 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 KRBOX1C9JBD0 128 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 SULT1A1P50225 295 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 GNPNAT1Q96EK6 184 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-213ENST00000620219 SONP18583 2426 aaKnown RBP12.97□□□□□ -0.33
CPSF1-213ENST00000620219 COL12A1Q99715 3063 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 KIAA1324LA8MWY0 1029 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-213ENST00000620219 OR13C7P0DN81 318 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 ATP6V0CP27449 155 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 CFHR2P36980 270 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 AKR1C3P42330 323 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 MEF2CQ06413 473 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-213ENST00000620219 MMDQ15546 238 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 ZNF525Q8N782 197 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 CYTL1Q9NRR1 136 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 JKAMPQ9P055 326 aa12.97□□□□□ -0.33
CPSF1-213ENST00000620219 IGKV1-5P01602 117 aa12.96□□□□□ -0.33
CPSF1-213ENST00000620219 IGHV3-48P01763 117 aa12.96□□□□□ -0.33
CPSF1-213ENST00000620219 WFDC1Q9HC57 220 aa12.96□□□□□ -0.33
CPSF1-213ENST00000620219 DSCAMO60469 2012 aa12.96□□□□□ -0.33
CPSF1-213ENST00000620219 SRSF4Q08170 494 aaKnown RBP12.96□□□□□ -0.33
CPSF1-213ENST00000620219 ZNF134P52741 427 aa12.96□□□□□ -0.34
CPSF1-213ENST00000620219 FAM122CQ6P4D5 195 aa12.96□□□□□ -0.34
CPSF1-213ENST00000620219 ITLN2Q8WWU7 325 aaPredicted RBP12.96□□□□□ -0.34
CPSF1-213ENST00000620219 CLEC7AQ9BXN2 247 aa12.96□□□□□ -0.34
CPSF1-213ENST00000620219 TNFRSF19Q9NS68 423 aa12.96□□□□□ -0.34
CPSF1-213ENST00000620219 OR51B2Q9Y5P1 312 aa12.96□□□□□ -0.34
CPSF1-213ENST00000620219 ZNF880Q6PDB4 577 aa12.96□□□□□ -0.34
CPSF1-213ENST00000620219 C22orf15Q8WYQ4 148 aa12.96□□□□□ -0.34
CPSF1-213ENST00000620219 IL22RA2Q969J5 263 aa12.96□□□□□ -0.34
CPSF1-213ENST00000620219 TLE4Q04727 773 aa12.95□□□□□ -0.34
CPSF1-213ENST00000620219 ZNF674Q2M3X9 581 aa12.95□□□□□ -0.34
CPSF1-213ENST00000620219 LSM10Q969L4 123 aaKnown RBP12.95□□□□□ -0.34
CPSF1-213ENST00000620219 LYRM2Q9NU23 88 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-213ENST00000620219 GNG13Q9P2W3 67 aa12.95□□□□□ -0.34
CPSF1-213ENST00000620219 SSUH2Q9Y2M2 353 aa12.95□□□□□ -0.34
CPSF1-213ENST00000620219 FGF8P55075 233 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-213ENST00000620219 WDR25Q64LD2 544 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-213ENST00000620219 OR4D5Q8NGN0 318 aa12.95□□□□□ -0.34
CPSF1-213ENST00000620219 MFSD2BA6NFX1 497 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 FGF2P09038 288 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 ZNF585BQ52M93 769 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 CST9LP1Q5W188 147 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 OR10A7Q8NGE5 316 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 ZNF596Q8TC21 504 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 Q8TCH9 128 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 SSMEM1Q8WWF3 244 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 MISP3Q96FF7 219 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 ATP5SQ99766 215 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 LHBP01229 141 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 RAB13P51153 203 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 LRTM2Q8N967 370 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 CTSZQ9UBR2 303 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 C17orf112F2Z3M2 114 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 C19orf84I3L1E1 186 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 TMEM50AO95807 157 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 REG1AP05451 166 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 CEACAM3P40198 252 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 NMSQ5H8A3 153 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 AMMECR1Q9Y4X0 333 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-213ENST00000620219 C15orf65H3BRN8 121 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 OPRK1P41145 380 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 KLRD1Q13241 179 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 C17orf58Q2M2W7 97 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 HEPN1Q6WQI6 88 aa12.94□□□□□ -0.34
CPSF1-213ENST00000620219 MRPL41Q8IXM3 137 aaKnown RBP12.94□□□□□ -0.34
CPSF1-213ENST00000620219 DMRTC2Q8IXT2 367 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms