RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 DNAJC9-AS1A6NH13 148 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 NBR2O15453 112 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 TCF21O43680 179 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 S1PR2O95136 353 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 SPDEFO95238 335 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 DUS4LO95620 317 aaKnown RBP11.75□□□□□ -0.53
CD48-203ENST00000613788 ERVK-16P61578 105 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 DHRS2Q13268 280 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 VMA21Q3ZAQ7 101 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 TMEM219Q86XT9 240 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 LGI3Q8N145 548 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 CASTOR1Q8WTX7 329 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 CHPT1Q8WUD6 406 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 IL22RA2Q969J5 263 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 R3HDM4Q96D70 268 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 RBMXL1Q96E39 390 aaKnown RBP11.75□□□□□ -0.53
CD48-203ENST00000613788 TMEM56Q96MV1 263 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 CHIAQ9BZP6 476 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 TMEM56-RWDD3S4R434 201 aa11.75□□□□□ -0.53
CD48-203ENST00000613788 SRRM4A7MD48 611 aaKnown RBP11.74□□□□□ -0.53
CD48-203ENST00000613788 M0QZK8 103 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 KRASP01116 189 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 F2RL1P55085 397 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 FBLN7Q53RD9 439 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 DMBX1Q8NFW5 382 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 COQ8AQ8NI60 647 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 VSTM2AQ8TAG5 236 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 RBPMSQ93062 196 aaKnown RBP11.74□□□□□ -0.53
CD48-203ENST00000613788 RHOVQ96L33 236 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 PLSCR3Q9NRY6 295 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 MOB4Q9Y3A3 225 aa11.74□□□□□ -0.53
CD48-203ENST00000613788 NSD1Q96L73 2696 aaPredicted RBP11.74□□□□□ -0.53
CD48-203ENST00000613788 FN1P02751 2386 aaKnown RBP11.73□□□□□ -0.53
CD48-203ENST00000613788 MARCH11A6NNE9 402 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 RRHO14718 337 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 FGF16O43320 207 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 NDUFA3O95167 84 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 CNTFRP26992 372 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 UBE2KP61086 200 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 PSG5Q15238 335 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 POU2AF1Q16633 256 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 TMEM268Q5VZI3 342 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 SELENOHQ8IZQ5 122 aaKnown RBP11.73□□□□□ -0.53
CD48-203ENST00000613788 TEX45Q8NA69 505 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 ZNF431Q8TF32 576 aaPredicted RBP11.73□□□□□ -0.53
CD48-203ENST00000613788 DUX5Q96PT3 197 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 PHB2Q99623 299 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 RASL11BQ9BPW5 248 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 ESM1Q9NQ30 184 aa11.73□□□□□ -0.53
CD48-203ENST00000613788 SNRPGP15A8MWD9 76 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 SLC25A17O43808 307 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 IGKV1-39P01597 117 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 IGLV2-23P01705 113 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 IGKV1D-39P04432 117 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 G6PCP35575 357 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 PLGLAQ15195 96 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 ANKRD55Q3KP44 614 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 SSX9Q7RTT3 188 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 VKORC1L1Q8N0U8 176 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 CADM3Q8N126 398 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 LRTM2Q8N967 370 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 Q8N9W7 124 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 OR52B4Q8NGK2 314 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 RNASE11Q8TAA1 199 aaKnown RBP11.72□□□□□ -0.53
CD48-203ENST00000613788 MITD1Q8WV92 249 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 RRNAD1Q96FB5 475 aaKnown RBP11.72□□□□□ -0.53
CD48-203ENST00000613788 SEC22AQ96IW7 307 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 SEC22CQ9BRL7 303 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 METTL1Q9UBP6 276 aaKnown RBP11.72□□□□□ -0.53
CD48-203ENST00000613788 MTORP42345 2549 aa11.72□□□□□ -0.53
CD48-203ENST00000613788 A0A0B4J2A0 478 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 DUXBA0A1W2PPF3 345 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 GPR137BO60478 399 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 CREBL2O60519 120 aaPredicted RBP11.71□□□□□ -0.53
CD48-203ENST00000613788 OR2A4O95047 310 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 RNASE1P07998 156 aaKnown RBP11.71□□□□□ -0.53
CD48-203ENST00000613788 SAA1P0DJI8 122 aaPredicted RBP11.71□□□□□ -0.53
CD48-203ENST00000613788 AKR1C2P52895 323 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 UBA52P62987 128 aaKnown RBP11.71□□□□□ -0.53
CD48-203ENST00000613788 TATDN3Q17R31 274 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 C5orf64Q2M2E5 130 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 LIN54Q6MZP7 749 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 H2BFWTQ7Z2G1 175 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 LHFPL5Q8TAF8 219 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 OR2A7Q96R45 310 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 FBXL15Q9H469 300 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 BET1LQ9NYM9 111 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 PRR13Q9NZ81 148 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 SHPKQ9UHJ6 478 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 SIGLEC9Q9Y336 463 aa11.71□□□□□ -0.53
CD48-203ENST00000613788 ZFHX3Q15911 3703 aa11.71□□□□□ -0.54
CD48-203ENST00000613788 TRIM77I1YAP6 450 aa11.7□□□□□ -0.54
CD48-203ENST00000613788 CHST1O43916 411 aa11.7□□□□□ -0.54
CD48-203ENST00000613788 VDAC1P21796 283 aa11.7□□□□□ -0.54
CD48-203ENST00000613788 RPL15P61313 204 aaKnown RBP11.7□□□□□ -0.54
CD48-203ENST00000613788 OR4A47Q6IF82 309 aa11.7□□□□□ -0.54
CD48-203ENST00000613788 PPP1R27Q86WC6 154 aa11.7□□□□□ -0.54
CD48-203ENST00000613788 FAM219AQ8IW50 185 aa11.7□□□□□ -0.54
CD48-203ENST00000613788 PUSL1Q8N0Z8 303 aaKnown RBP11.7□□□□□ -0.54
CD48-203ENST00000613788 C12orf45Q8N5I9 185 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms