RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 NRMQ8IXM6 262 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 DEFB125Q8N687 156 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 OR51A7Q8NH64 312 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 OR6X1Q8NH79 312 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 IFT81Q8WYA0 676 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 TMEM106AQ96A25 262 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 EEF1AKMT3Q96AZ1 226 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 PPCDCQ96CD2 204 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 SEH1LQ96EE3 360 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 TEX37Q96LM6 180 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 AGMATQ9BSE5 352 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 GNB4Q9HAV0 340 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 TMBIM4Q9HC24 238 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 AMBNQ9NP70 447 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 SDHAF2Q9NX18 166 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 CYB5R1Q9UHQ9 305 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 PCTPQ9UKL6 214 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 TRAV8-7A0A075B6U6 113 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 A0A087WUJ7 227 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 A0A096LPI6 279 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 ODF3BA8MYP8 253 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 IQCF6A8MYZ5 107 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 H7C2Y5 167 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 I3L521 148 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 LGALS9O00182 355 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 FKBP6O75344 327 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 OXTP01178 125 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 IGHV1-8P0DP01 117 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 MUC1P15941 1255 aaPredicted RBP3.1□□□□□ -1.91
LINC00540-201ENST00000611481 HLA-GP17693 338 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 HLA-DMAP28067 261 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 MAS1LP35410 378 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 SERPINB8P50452 374 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 VBP1P61758 197 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 COPZ1P61923 177 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 RPL31P62899 125 aaKnown RBP3.1□□□□□ -1.91
LINC00540-201ENST00000611481 SGCAQ16586 387 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 LELP1Q5T871 98 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 FAM53AQ6NSI3 398 aaPredicted RBP3.1□□□□□ -1.91
LINC00540-201ENST00000611481 SLC35E3Q7Z769 313 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 STX12Q86Y82 276 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 PUSL1Q8N0Z8 303 aaKnown RBP3.1□□□□□ -1.91
LINC00540-201ENST00000611481 UBALD1Q8TB05 177 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 LRRC29Q8WV35 223 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 RNF133Q8WVZ7 376 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 RCN3Q96D15 328 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 PRAC1Q96KF2 57 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 TSNAXQ99598 290 aaKnown RBP3.1□□□□□ -1.91
LINC00540-201ENST00000611481 RARRES2Q99969 163 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 CLEC7AQ9BXN2 247 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 SELENOIQ9C0D9 397 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 WFDC10AQ9H1F0 79 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 KCNIP1Q9NZI2 227 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF391Q9UJN7 358 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 NDUFAF1Q9Y375 327 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 MOB4Q9Y3A3 225 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 HSPE1-MOB4S4R3N1 261 aa3.1□□□□□ -1.91
LINC00540-201ENST00000611481 FAT3Q8TDW7 4589 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 FOXI3A8MTJ6 420 aaPredicted RBP3.09□□□□□ -1.91
LINC00540-201ENST00000611481 MIF4GDA9UHW6 222 aaKnown RBP3.09□□□□□ -1.91
LINC00540-201ENST00000611481 FAM220BPB1ANY3 271 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 H0Y980 276 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 SLC17A2O00624 439 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 OR2T1O43869 369 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 ADAP1O75689 374 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 IFNA14P01570 189 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 CT45A10P0DMU9 189 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 CCL3L1P16619 93 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 IGFBP3P17936 291 aaPredicted RBP3.09□□□□□ -1.91
LINC00540-201ENST00000611481 RAB4AP20338 218 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 RAB5AP20339 215 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 BRS3P32247 399 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 KIR2DS2P43631 304 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 ST3GAL4Q11206 333 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 FLOT2Q14254 428 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF146Q15072 292 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 OR8G1Q15617 311 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 MICAQ29983 383 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 BSXQ3C1V8 233 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 ZBED5Q49AG3 693 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 DNAL1Q4LDG9 190 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 FFAR4Q5NUL3 377 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 MRPL2Q5T653 305 aaKnown RBP3.09□□□□□ -1.91
LINC00540-201ENST00000611481 TPTE2P1Q5T6R2 138 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 TTC33Q6PID6 262 aaPredicted RBP3.09□□□□□ -1.91
LINC00540-201ENST00000611481 FBXW12Q6X9E4 464 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 Q6ZN92 141 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 MRPL52Q86TS9 123 aaKnown RBP3.09□□□□□ -1.91
LINC00540-201ENST00000611481 PPP1R27Q86WC6 154 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 PGAM4Q8N0Y7 254 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 HSD17B11Q8NBQ5 300 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 OR5K1Q8NHB7 308 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 C11orf45Q8TAV5 145 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 MRGPRDQ8TDS7 321 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 SLC25A44Q96H78 314 aaPredicted RBP3.09□□□□□ -1.91
LINC00540-201ENST00000611481 PGLYRP4Q96LB8 373 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 WFDC6Q9BQY6 131 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 DPY30Q9C005 99 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 ALX4Q9H161 411 aaPredicted RBP3.09□□□□□ -1.91
LINC00540-201ENST00000611481 PARLQ9H300 379 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms