RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PLSCR3Q9NRY6 295 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 C1RLQ9NZP8 487 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 VPREB3Q9UKI3 123 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 A0A0A6YYJ9 748 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 SNRPGP15A8MWD9 76 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 SPDEFO95238 335 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 IGKV1-39P01597 117 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 IGLV2-23P01705 113 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 IGKV1D-39P04432 117 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 HILS1P60008 231 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 LY6EQ16553 131 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 ANKRD55Q3KP44 614 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 CADM3Q8N126 398 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 LGI3Q8N145 548 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 LRTM2Q8N967 370 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 OR52B4Q8NGK2 314 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 LHFPL5Q8TAF8 219 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 ZNF431Q8TF32 576 aaPredicted RBP11.46□□□□□ -0.57
UPF1-211ENST00000600868 CASTOR1Q8WTX7 329 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 MITD1Q8WV92 249 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 RBPMSQ93062 196 aaKnown RBP11.46□□□□□ -0.57
UPF1-211ENST00000600868 JMJD8Q96S16 334 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 SEC22CQ9BRL7 303 aa11.46□□□□□ -0.57
UPF1-211ENST00000600868 GPN1Q9HCN4 374 aaPredicted RBP11.46□□□□□ -0.57
UPF1-211ENST00000600868 A0A0B4J2A0 478 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 DNAJC9-AS1A6NH13 148 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 NBR2O15453 112 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 ATG12O94817 140 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 NDUFA3O95167 84 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 CNTFRP26992 372 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 F2RL1P55085 397 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 UBE2KP61086 200 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 ERVK-16P61578 105 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 PSG5Q15238 335 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 MMDQ15546 238 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 TATDN3Q17R31 274 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 TMEM219Q86XT9 240 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 ZNF695Q8IW36 515 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 SELENOHQ8IZQ5 122 aaKnown RBP11.45□□□□□ -0.58
UPF1-211ENST00000600868 COQ8AQ8NI60 647 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 R3HDM4Q96D70 268 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 SEC22AQ96IW7 307 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 RHOVQ96L33 236 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 SLC25A33Q9BSK2 321 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 RAB18Q9NP72 206 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 ESM1Q9NQ30 184 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 PRR13Q9NZ81 148 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 KIAA1456Q9P272 454 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 SHPKQ9UHJ6 478 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 MOB4Q9Y3A3 225 aa11.45□□□□□ -0.58
UPF1-211ENST00000600868 A0A0B4J293 547 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 DUXBA0A1W2PPF3 345 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 C7orf66A4D0T2 115 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 MARCH11A6NNE9 402 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 M0QZK8 103 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 RRHO14718 337 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 FGF16O43320 207 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 CREBL2O60519 120 aaPredicted RBP11.44□□□□□ -0.58
UPF1-211ENST00000600868 KRASP01116 189 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 CRYGBP07316 175 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 G6PCP35575 357 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 VMA21Q3ZAQ7 101 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 TMEM268Q5VZI3 342 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 FAM71E2Q8N5Q1 922 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 TEX45Q8NA69 505 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 VSTM2AQ8TAG5 236 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 PHB2Q99623 299 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 CHIAQ9BZP6 476 aa11.44□□□□□ -0.58
UPF1-211ENST00000600868 TEP1Q99973 2627 aaKnown RBP11.43□□□□□ -0.58
UPF1-211ENST00000600868 NCBP2LA6PVI3 153 aaKnown RBP11.43□□□□□ -0.58
UPF1-211ENST00000600868 SLC25A17O43808 307 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 CHST1O43916 411 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 OR2A4O95047 310 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 IGKV1-5P01602 117 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 IL6RP08887 468 aaPredicted RBP11.43□□□□□ -0.58
UPF1-211ENST00000600868 P0C879 139 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 SAA1P0DJI8 122 aaPredicted RBP11.43□□□□□ -0.58
UPF1-211ENST00000600868 C5orf64Q2M2E5 130 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 OR4A47Q6IF82 309 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 FAM219AQ8IW50 185 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 VKORC1L1Q8N0U8 176 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 PUSL1Q8N0Z8 303 aaKnown RBP11.43□□□□□ -0.58
UPF1-211ENST00000600868 C12orf45Q8N5I9 185 aaPredicted RBP11.43□□□□□ -0.58
UPF1-211ENST00000600868 SLC35G3Q8N808 338 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 Q8N9W7 124 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 DMBX1Q8NFW5 382 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 OR4A5Q8NH83 315 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 LSM10Q969L4 123 aaKnown RBP11.43□□□□□ -0.58
UPF1-211ENST00000600868 OR2A7Q96R45 310 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 TNFRSF19Q9NS68 423 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 BET1LQ9NYM9 111 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 SIGLEC9Q9Y336 463 aa11.43□□□□□ -0.58
UPF1-211ENST00000600868 DBX1A6NMT0 343 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 TCF21O43680 179 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 RNASE1P07998 156 aaKnown RBP11.42□□□□□ -0.58
UPF1-211ENST00000600868 VDAC1P21796 283 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 AKR1C2P52895 323 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 SSX9Q7RTT3 188 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 H2BFWTQ7Z2G1 175 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 LYZL2Q7Z4W2 148 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms