RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CLEC18BQ6UXF7 455 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 LEAP2Q969E1 77 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 MS4A10Q96PG2 267 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 PLSCR2Q9NRY7 297 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.28□□□□□ -1.089e-8■■■■■ 63.4
LIG3-216ENST00000593099 IGKV1-9A0A0C4DH69 117 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 CRYM-AS1A6NIL9 109 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 SRRM5B3KS81 715 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 MFNGO00587 321 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 COX7A2P2O60397 106 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 METTL15P1P0C7V9 234 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 KLF9Q13886 244 aaPredicted RBP8.28□□□□□ -1.08
LIG3-216ENST00000593099 ACOT6Q3I5F7 207 aaPredicted RBP8.28□□□□□ -1.08
LIG3-216ENST00000593099 RTN4RL2Q86UN3 420 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 MMD2Q8IY49 270 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 ZNF645Q8N7E2 425 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 OR2T6Q8NHC8 308 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 GRAMD2BQ96HH9 432 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 SLC25A32Q9H2D1 315 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 PARP11Q9NR21 331 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 KBTBD11-OT1A0A1B0GTJ5 212 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 SPINK9Q5DT21 86 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 TMEM255AQ5JRV8 349 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 FAM103A1Q9BTL3 118 aaKnown RBP8.28□□□□□ -1.08
LIG3-216ENST00000593099 UQCC1Q9NVA1 299 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 C12orf77C9JDV5 145 aa8.27□□□□□ -1.08
LIG3-216ENST00000593099 PLAUP00749 431 aa8.27□□□□□ -1.08
LIG3-216ENST00000593099 SLC6A1P30531 599 aa8.27□□□□□ -1.08
LIG3-216ENST00000593099 OTX1P32242 354 aaPredicted RBP8.27□□□□□ -1.08
LIG3-216ENST00000593099 MFAP4P55083 255 aa8.27□□□□□ -1.08
LIG3-216ENST00000593099 OR10A7Q8NGE5 316 aa8.27□□□□□ -1.08
LIG3-216ENST00000593099 DAZAP1Q96EP5 407 aaKnown RBP8.27□□□□□ -1.08
LIG3-216ENST00000593099 PLSCR3Q9NRY6 295 aa8.27□□□□□ -1.08
LIG3-216ENST00000593099 METTL1Q9UBP6 276 aaKnown RBP8.27□□□□□ -1.08
LIG3-216ENST00000593099 G6PCP35575 357 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 FHL1Q13642 323 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 ALX4Q9H161 411 aaPredicted RBP8.27□□□□□ -1.09
LIG3-216ENST00000593099 PPP1R3EQ9H7J1 279 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 ZNF256Q9Y2P7 627 aaPredicted RBP8.27□□□□□ -1.09
LIG3-216ENST00000593099 UTRNP46939 3433 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 PHF3Q92576 2039 aaKnown RBP8.27□□□□□ -1.09
LIG3-216ENST00000593099 A0A0G2JK05 382 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 TMEM178BH3BS89 294 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 BMPR1BO00238 502 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 SIGLEC5O15389 551 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 SYNGR2O43760 224 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 UNC119Q13432 240 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 OR2T10Q8NGZ9 312 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 WDR89Q96FK6 387 aaPredicted RBP8.27□□□□□ -1.09
LIG3-216ENST00000593099 JMJD8Q96S16 334 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 ZNF835Q9Y2P0 537 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 MFSD2BA6NFX1 497 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 B4DSR2 109 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 J3QR06 171 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 GNG7O60262 68 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 SULT1A1P50225 295 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 DHRS7BQ6IAN0 325 aaPredicted RBP8.27□□□□□ -1.09
LIG3-216ENST00000593099 OR13A1Q8NGR1 328 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 SPAG8Q99932 426 aaPredicted RBP8.27□□□□□ -1.09
LIG3-216ENST00000593099 NXF2Q9GZY0 626 aaKnown RBP8.27□□□□□ -1.09
LIG3-216ENST00000593099 OR1A1Q9P1Q5 309 aa8.27□□□□□ -1.09
LIG3-216ENST00000593099 TCL1AP56279 114 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 PACRGQ96M98 296 aaPredicted RBP8.26□□□□□ -1.09
LIG3-216ENST00000593099 TMEM147Q9BVK8 224 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 METRNQ9UJH8 293 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 MED13LQ71F56 2210 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 PCDH15Q96QU1 1955 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 UMAD1C9J7I0 102 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 RGS13O14921 159 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 TCTAP57738 103 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 TMUB2Q71RG4 321 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 ZNF485Q8NCK3 441 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 MARVELD1Q9BSK0 173 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 CABLES2Q9BTV7 478 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 ACTR3CQ9C0K3 210 aaPredicted RBP8.26□□□□□ -1.09
LIG3-216ENST00000593099 CLEC5AQ9NY25 188 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 LOC105371267A0A1B0GV96 52 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 DUXBA0A1W2PPF3 345 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 ADAP1O75689 374 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 SLC38A11Q08AI6 406 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 RSPO3Q9BXY4 272 aaPredicted RBP8.26□□□□□ -1.09
LIG3-216ENST00000593099 IL36RNQ9UBH0 155 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 HELTA6NFD8 242 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 CCL3L1P16619 93 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 ZNF79Q15937 498 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 DNM1P46Q6ZS02 220 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 Q8NA96 180 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 DUSP18Q8NEJ0 188 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 OR4C13Q8NGP0 309 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 DCTN5Q9BTE1 182 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 DNAJC4Q9NNZ3 241 aa8.26□□□□□ -1.09
LIG3-216ENST00000593099 KLF2Q9Y5W3 355 aaPredicted RBP8.26□□□□□ -1.09
LIG3-216ENST00000593099 A0A1B0GU03 582 aa8.25□□□□□ -1.09
LIG3-216ENST00000593099 ZNF785A8K8V0 405 aa8.25□□□□□ -1.09
LIG3-216ENST00000593099 TNFRSF14Q92956 283 aa8.25□□□□□ -1.09
LIG3-216ENST00000593099 RSG1Q9BU20 258 aa8.25□□□□□ -1.09
LIG3-216ENST00000593099 ANKHD1Q8IWZ3 2542 aaKnown RBP8.25□□□□□ -1.09
LIG3-216ENST00000593099 SHISA3A0PJX4 238 aa8.25□□□□□ -1.09
LIG3-216ENST00000593099 A6NDN8 102 aa8.25□□□□□ -1.09
LIG3-216ENST00000593099 RPL8P62917 257 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms