RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790		M0R296	226 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790		M0R2Z0	102 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	ITGB1BP1	O14713	200 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	MGST3	O14880	152 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	TMPRSS2	O15393	492 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	ZIC3	O60481	467 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF205	O95201	554 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SP1	P08047	785 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	CT45A10	P0DMU9	189 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	EDN3	P14138	238 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	NDUFB7	P17568	137 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	GTF2H5	Q6ZYL4	71 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	CNEP1R1	Q8N9A8	125 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	OR2M7	Q8NG81	312 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	RNF138	Q8WVD3	245 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	VPS25	Q9BRG1	176 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	GAL3ST2	Q9H3Q3	398 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PAM16	Q9Y3D7	125 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	FANCM	Q8IYD8	2048 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	WIPF3	A6NGB9	483 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PPIH	O43447	177 aa	Known RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	MMP23A	O75900	390 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	OR4A8	P0C604	315 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF146	Q15072	292 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	VMA21	Q3ZAQ7	101 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SPATA45	Q537H7	98 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	LEMD1	Q68G75	181 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PCSK4	Q6UW60	755 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	TUSC5	Q8IXB3	177 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	C17orf78	Q8N4C9	275 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790		Q8NFD4	153 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	OR4P4	Q8NGL7	312 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	TMEM171	Q8WVE6	324 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	IMMP1L	Q96LU5	166 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	MAP1LC3C	Q9BXW4	147 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SRXN1	Q9BYN0	137 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	NGB	Q9NPG2	151 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	YLPM1	P49750	1951 aa	Known RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	HEATR5A	Q86XA9	2040 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790		A6NDN8	102 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	C1QTNF9B	B2RNN3	333 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	FNDC10	F2Z333	226 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SIAH2	O43255	324 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	EFNA2	O43921	213 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	GOSR1	O95249	250 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	CRYAA	P02489	173 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PFN1	P07737	140 aa	Known RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	OR10J4	P0C629	311 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	GZMB	P10144	247 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	GCHFR	P30047	84 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	CA7	P43166	264 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	COMP	P49747	757 aa	Predicted RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	UBE2L3	P68036	154 aa	Known RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	TFF2	Q03403	129 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SPEM2	Q0P670	501 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PSG5	Q15238	335 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	IBA57	Q5T440	356 aa	Known RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF497	Q6ZNH5	498 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	CALHM1	Q8IU99	346 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	MMD2	Q8IY49	270 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SLC25A45	Q8N413	288 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PNKD	Q8N490	385 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	NHLRC2	Q8NBF2	726 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	OR1K1	Q8NGR3	316 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	MRGPRD	Q8TDS7	321 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	ABHD3	Q8WU67	409 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	KCNS1	Q96KK3	526 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SIGLEC12	Q96PQ1	595 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	C20orf144	Q9BQM9	153 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PYGO2	Q9BRQ0	406 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	OSTC	Q9NRP0	149 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	CBLN4	Q9NTU7	201 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PROCR	Q9UNN8	238 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	WDR83OS	Q9Y284	106 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	ABCA4	P78363	2273 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	IGKV1-12	A0A0C4DH73	117 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	TEX50	A0A1B0GTY4	177 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	hADV38S2	A0JD32	116 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	ODAM	A1E959	279 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF716	A6NP11	495 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	C17orf51	A8MQB3	221 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790		A8MWL6	223 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	S1PR2	O95136	353 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	IGKV1D-12	P01611	117 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	OR5AL1	P0C617	328 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	LINC00869	P0C866	280 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	ARL14EPL	P0DKL9	152 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	TNFRSF1A	P19438	455 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	HNF1A	P20823	631 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	CSN1S1	P47710	185 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	HSPE1	P61604	102 aa	Known RBP	2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	TLE1	Q04724	770 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	LTC4S	Q16873	150 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	TRIM61	Q5EBN2	209 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	DCAF10	Q5QP82	559 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	RNASEK	Q6P5S7	137 aa	Known RBP	2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	CENPV	Q7Z7K6	275 aa	Predicted RBP	2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	C11orf42	Q8N5U0	333 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	SCCPDH	Q8NBX0	429 aa		2.99	□□□□□ -1.93
VMP1-216	ENST00000592790	GATAD1	Q8WUU5	269 aa		2.99	□□□□□ -1.93

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