RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 HES1Q14469 280 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 TMEM187Q14656 261 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 RBMS2Q15434 407 aaKnown RBP7.34□□□□□ -1.23
VPS35-211ENST00000569950 SP6Q3SY56 376 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 C19orf54Q5BKX5 351 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 NRARPQ7Z6K4 114 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 SLC25A42Q86VD7 318 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 OR8H1Q8NGG4 311 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 OR4C13Q8NGP0 309 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 OSR1Q8TAX0 266 aaPredicted RBP7.34□□□□□ -1.23
VPS35-211ENST00000569950 ZFAND1Q8TCF1 268 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 BORCS5Q969J3 196 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 FLYWCH2Q96CP2 140 aaKnown RBP7.34□□□□□ -1.23
VPS35-211ENST00000569950 GALNT14Q96FL9 552 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 SEC22AQ96IW7 307 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 MDFIQ99750 246 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 SLC25A21Q9BQT8 299 aaPredicted RBP7.34□□□□□ -1.23
VPS35-211ENST00000569950 TMEM222Q9H0R3 208 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 NAA60Q9H7X0 242 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 PLEKHA2Q9HB19 425 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 LIN7CQ9NUP9 197 aaKnown RBP7.34□□□□□ -1.23
VPS35-211ENST00000569950 PRR13Q9NZ81 148 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 PITPNC1Q9UKF7 332 aa7.34□□□□□ -1.23
VPS35-211ENST00000569950 TRRAPQ9Y4A5 3859 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 IGHV7-81A0A0B4J1V7 117 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 C3orf85A0A1B0GTC6 90 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 TMEM89A2RUT3 159 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 E7EUB6 86 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 SLC25A17O43808 307 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 SPDEFO95238 335 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 CDS2O95674 445 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 IGHG2P01859 326 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 OR5AC1P0C628 307 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 RRASP10301 218 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 ANXA7P20073 488 aaKnown RBP7.33□□□□□ -1.24
VPS35-211ENST00000569950 KIR2DS2P43631 304 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 LGALS7P47929 136 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 RIPPLY3P57055 190 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 UBE2KP61086 200 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 RPS16P62249 146 aaKnown RBP7.33□□□□□ -1.24
VPS35-211ENST00000569950 CATR1Q13166 79 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 PPP1R1AQ13522 171 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 MMDQ15546 238 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 RTL8BQ17RB0 113 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 ABCA11PQ4W5N1 156 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 CMTM1Q8IZ96 169 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 CADM3Q8N126 398 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 TCTEX1D1Q8N7M0 179 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 DUSP18Q8NEJ0 188 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 OR4S2Q8NH73 311 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 LINC01006Q8NI28 216 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 RHOVQ96L33 236 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 HARBI1Q96MB7 349 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 WNT10AQ9GZT5 417 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 C20orf85Q9H1P6 137 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 RANBP3Q9H6Z4 567 aaPredicted RBP7.33□□□□□ -1.24
VPS35-211ENST00000569950 PRELID3BQ9Y3B1 194 aa7.33□□□□□ -1.24
VPS35-211ENST00000569950 WNK1Q9H4A3 2382 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 A0A0B4J293 547 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 BTBD17A6NE02 478 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 DBX1A6NMT0 343 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 SHOXO15266 292 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 HPRT1P00492 218 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 MYOD1P15172 320 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 MDKP21741 143 aaPredicted RBP7.32□□□□□ -1.24
VPS35-211ENST00000569950 PROK1P58294 105 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 TAS2R31P59538 309 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 CFHR3Q02985 330 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 IZUMO4Q1ZYL8 232 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 ANKRD55Q3KP44 614 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 TMEM128Q5BJH2 165 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 ASPHD1Q5U4P2 390 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 OR4A47Q6IF82 309 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 C10orf99Q6UWK7 81 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 Q6ZRM9 215 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 TMEM167AQ8TBQ9 72 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 TMEM56Q96MV1 263 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 C19orf24Q9BVV8 132 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 ALX4Q9H161 411 aaPredicted RBP7.32□□□□□ -1.24
VPS35-211ENST00000569950 ZNF430Q9H8G1 570 aaPredicted RBP7.32□□□□□ -1.24
VPS35-211ENST00000569950 PALMDQ9NP74 551 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 NUDT15Q9NV35 164 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 BET1LQ9NYM9 111 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 COMMD9Q9P000 198 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 METTL1Q9UBP6 276 aaKnown RBP7.32□□□□□ -1.24
VPS35-211ENST00000569950 C14orf166Q9Y224 244 aaKnown RBP7.32□□□□□ -1.24
VPS35-211ENST00000569950 TMEM56-RWDD3S4R434 201 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 CMYA5Q8N3K9 4069 aa7.32□□□□□ -1.24
VPS35-211ENST00000569950 TEX13DA0A0J9YY54 714 aaPredicted RBP7.31□□□□□ -1.24
VPS35-211ENST00000569950 C9orf170A2RU37 121 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 MARCH11A6NNE9 402 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 NCBP2LA6PVI3 153 aaKnown RBP7.31□□□□□ -1.24
VPS35-211ENST00000569950 RNF212BA8MTL3 300 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 M0QZK8 103 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 KBTBD11O94819 623 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 CA2P00918 260 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 OR9G9P0C7N8 305 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 RPA2P15927 270 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 NQO2P16083 231 aa7.31□□□□□ -1.24
VPS35-211ENST00000569950 AKR1C4P17516 323 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms