RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OR51G1Q8NGK1 321 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 RNASEH2CQ8TDP1 164 aaKnown RBP11.09□□□□□ -0.63
VPS4A-204ENST00000566354 INTS1Q8N201 2190 aaKnown RBP11.09□□□□□ -0.63
VPS4A-204ENST00000566354 CHD3Q12873 2000 aaKnown RBP11.09□□□□□ -0.63
VPS4A-204ENST00000566354 TMEM238C9JI98 176 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 DVL1O14640 695 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 GOSR1O95249 250 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 RPLP1P05386 114 aaKnown RBP11.08□□□□□ -0.64
VPS4A-204ENST00000566354 IL2RGP31785 369 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 RPL23P62829 140 aaKnown RBP11.08□□□□□ -0.64
VPS4A-204ENST00000566354 ZNF146Q15072 292 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 NANOS1Q8WY41 292 aaKnown RBP11.08□□□□□ -0.64
VPS4A-204ENST00000566354 OR5B12Q96R08 314 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 GP6Q9HCN6 339 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 MANBALQ9NQG1 85 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 ESPL1Q14674 2120 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 H7BYZ3 331 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 CD55P08174 381 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 COA6Q5JTJ3 125 aaKnown RBP11.08□□□□□ -0.64
VPS4A-204ENST00000566354 ACSM6Q6P461 480 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 ZNF645Q8N7E2 425 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 UBALD1Q8TB05 177 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 RPUSD4Q96CM3 377 aaKnown RBP11.08□□□□□ -0.64
VPS4A-204ENST00000566354 TMEM147Q9BVK8 224 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.08□□□□□ -0.64
VPS4A-204ENST00000566354 RPH3ALQ9UNE2 315 aa11.08□□□□□ -0.64
VPS4A-204ENST00000566354 YLPM1P49750 1951 aaKnown RBP11.08□□□□□ -0.64
VPS4A-204ENST00000566354 NBASA2RRP1 2371 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 PPP5D1E7EU14 171 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 J3QW42 95 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 SMPD2O60906 423 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 GALR1P47211 349 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 JOSD1Q15040 202 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-204ENST00000566354 SPATA46Q5T0L3 261 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 WDR86Q86TI4 376 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 OR10G9Q8NGN4 311 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 OR10G7Q8NGN6 311 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 BCL2L2Q92843 193 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-204ENST00000566354 SNRNP40Q96DI7 357 aaKnown RBP11.07□□□□□ -0.64
VPS4A-204ENST00000566354 TXN2Q99757 166 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 KCNIP1Q9NZI2 227 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 LRRC30A6NM36 301 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 IL18BPO95998 194 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 KRASP01116 189 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 NPSP0C0P6 89 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 P0C879 139 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 MDKP21741 143 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-204ENST00000566354 COL10A1Q03692 680 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 MDP1Q86V88 176 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 C9orf106Q8NAJ2 232 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 OR1P1Q8NH06 330 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 ANAPC16Q96DE5 110 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 ACTR3CQ9C0K3 210 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-204ENST00000566354 PARLQ9H300 379 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 PRORYQ9H606 182 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 LAMP3Q9UQV4 416 aa11.07□□□□□ -0.64
VPS4A-204ENST00000566354 COX5AP20674 150 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 FAM3BP58499 235 aaPredicted RBP11.06□□□□□ -0.64
VPS4A-204ENST00000566354 IGFBP7Q16270 282 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 TBC1D28Q2M2D7 210 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 OR10P1Q8NGE3 313 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 GALMQ96C23 342 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 SLC25A22Q9H936 323 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 KALRNO60229 2985 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 CDIPTO14735 213 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 RAMP3O60896 148 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 VENTXO95231 258 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 HRASP01112 189 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 AMBPP02760 352 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 G6PCP35575 357 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 CATR1Q13166 79 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 ETFRF1Q6IPR1 90 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 RPRMLQ8N4K4 120 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 NECAP1Q8NC96 275 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 OR4F5Q8NH21 305 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 ACY3Q96HD9 319 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 GMPPAQ96IJ6 420 aaPredicted RBP11.06□□□□□ -0.64
VPS4A-204ENST00000566354 CIB3Q96Q77 187 aaPredicted RBP11.06□□□□□ -0.64
VPS4A-204ENST00000566354 OR4F4Q96R69 305 aa11.06□□□□□ -0.64
VPS4A-204ENST00000566354 ODAMA1E959 279 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 PMS2P5A8MQ11 134 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 HMGB3O15347 200 aaKnown RBP11.05□□□□□ -0.64
VPS4A-204ENST00000566354 GZMHP20718 246 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 TUBG1P23258 451 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 ARF6P62330 175 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 MRPL49Q13405 166 aaKnown RBP11.05□□□□□ -0.64
VPS4A-204ENST00000566354 FFAR4Q5NUL3 377 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 SEM1Q6ZVN7 128 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 ZNF709Q8N972 641 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 OR2D2Q9H210 308 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 CLN8Q9UBY8 286 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 PCNX1Q96RV3 2341 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 COL6A6A6NMZ7 2263 aa11.05□□□□□ -0.64
VPS4A-204ENST00000566354 TMEM30CPA0ZSE6 113 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 XKRY2A2RUG3 117 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 GZMBP10144 247 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 ERVS71-1P61550 626 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 FOXF2Q12947 444 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 EIF4EBP1Q13541 118 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-204ENST00000566354 LEMD1Q68G75 181 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms