RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LSM3P62310 102 aaKnown RBP15.96■□□□□ 0.15
CLN3-219ENST00000565778 HOGA1Q86XE5 327 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 CROCCP3Q8IVE0 287 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 TCTEX1D2Q8WW35 142 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 HSD17B10Q99714 261 aaKnown RBP15.96■□□□□ 0.15
CLN3-219ENST00000565778 TINAGL1Q9GZM7 467 aaPredicted RBP15.96■□□□□ 0.15
CLN3-219ENST00000565778 AUNIPQ9H7T9 357 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 CREBL2O60519 120 aaPredicted RBP15.95■□□□□ 0.14
CLN3-219ENST00000565778 SAA1P0DJI8 122 aaPredicted RBP15.95■□□□□ 0.14
CLN3-219ENST00000565778 PTHLHP12272 177 aa15.95■□□□□ 0.14
CLN3-219ENST00000565778 FCGR2CP31995 323 aa15.95■□□□□ 0.14
CLN3-219ENST00000565778 CDK10Q15131 360 aa15.95■□□□□ 0.14
CLN3-219ENST00000565778 MFSD4AQ8N468 514 aa15.95■□□□□ 0.14
CLN3-219ENST00000565778 SRSF12Q8WXF0 261 aaKnown RBP15.95■□□□□ 0.14
CLN3-219ENST00000565778 S100A16Q96FQ6 103 aaKnown RBP15.95■□□□□ 0.14
CLN3-219ENST00000565778 ELOVL1Q9BW60 279 aa15.95■□□□□ 0.14
CLN3-219ENST00000565778 ZNF430Q9H8G1 570 aaPredicted RBP15.95■□□□□ 0.14
CLN3-219ENST00000565778 TNFAIP8O95379 198 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 BRI3O95415 125 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 OR9G9P0C7N8 305 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 NHLRC4P0CG21 123 aaPredicted RBP15.94■□□□□ 0.14
CLN3-219ENST00000565778 ZP3P21754 424 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 RPS19P39019 145 aaKnown RBP15.94■□□□□ 0.14
CLN3-219ENST00000565778 MMD2Q8IY49 270 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 OR6Q1Q8NGQ2 317 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 SECTM1Q8WVN6 248 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 YIPF6Q96EC8 236 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 USMG5Q96IX5 58 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 TAS2R8Q9NYW2 309 aa15.94■□□□□ 0.14
CLN3-219ENST00000565778 SPNP16150 400 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 CBX5P45973 191 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 DEFA5Q01523 94 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 ZNF66Q6ZN08 573 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 OVCH2Q7RTZ1 564 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 VKORC1L1Q8N0U8 176 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 OR4S2Q8NH73 311 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 GPHA2Q96T91 129 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 CCL28Q9NRJ3 127 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 PEF1Q9UBV8 284 aaKnown RBP15.93■□□□□ 0.14
CLN3-219ENST00000565778 SMAD5-AS1Q9Y6J3 95 aa15.93■□□□□ 0.14
CLN3-219ENST00000565778 MEIS3P1A6NDR6 274 aa15.92■□□□□ 0.14
CLN3-219ENST00000565778 XRCC3O43542 346 aa15.92■□□□□ 0.14
CLN3-219ENST00000565778 ADAD2Q8NCV1 583 aaKnown RBP15.92■□□□□ 0.14
CLN3-219ENST00000565778 SPIN2AQ99865 258 aa15.92■□□□□ 0.14
CLN3-219ENST00000565778 ASCL2Q99929 193 aa15.92■□□□□ 0.14
CLN3-219ENST00000565778 SPIN2BQ9BPZ2 258 aa15.92■□□□□ 0.14
CLN3-219ENST00000565778 RSRP1Q9BUV0 290 aa15.92■□□□□ 0.14
CLN3-219ENST00000565778 TNFSF12O43508 249 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 OR2A4O95047 310 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 PPYP01298 95 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 EIF4EBP1Q13541 118 aaPredicted RBP15.91■□□□□ 0.14
CLN3-219ENST00000565778 ZNF343Q6P1L6 599 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 OR5AP2Q8NGF4 316 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 OR13F1Q8NGS4 319 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 VSTM2AQ8TAG5 236 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 OR2A7Q96R45 310 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 SLC5A7Q9GZV3 580 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 IFT46Q9NQC8 304 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 COL7A1Q02388 2944 aa15.91■□□□□ 0.14
CLN3-219ENST00000565778 HRASP01112 189 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 PRH1P02810 166 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 GP9P14770 177 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 BRWD1-AS2P59051 145 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 FXYD4P59646 89 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 DYRK1AQ13627 763 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 KLF5Q13887 457 aaPredicted RBP15.9■□□□□ 0.14
CLN3-219ENST00000565778 TATDN3Q17R31 274 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 UBE2NLQ5JXB2 153 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 C10orf55Q5SWW7 151 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 ANKRD13BQ86YJ7 626 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 SAMD12Q8N8I0 201 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 ZBTB34Q8NCN2 500 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 GIMAP1Q8WWP7 306 aa15.9■□□□□ 0.14
CLN3-219ENST00000565778 KIR2DS2P43631 304 aa15.89■□□□□ 0.13
CLN3-219ENST00000565778 ATP5G2Q06055 141 aa15.89■□□□□ 0.13
CLN3-219ENST00000565778 SSX9Q7RTT3 188 aa15.89■□□□□ 0.13
CLN3-219ENST00000565778 SLC25A42Q86VD7 318 aa15.89■□□□□ 0.13
CLN3-219ENST00000565778 TTC9CQ8N5M4 171 aa15.89■□□□□ 0.13
CLN3-219ENST00000565778 TMEM167AQ8TBQ9 72 aa15.89■□□□□ 0.13
CLN3-219ENST00000565778 SNAPC3Q92966 411 aa15.89■□□□□ 0.13
CLN3-219ENST00000565778 AKIP1Q9NQ31 210 aa15.89■□□□□ 0.13
CLN3-219ENST00000565778 HMX3A6NHT5 357 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 RBMXL2O75526 392 aaKnown RBP15.88■□□□□ 0.13
CLN3-219ENST00000565778 KBTBD11O94819 623 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 TRBV12-3P01733 135 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 SYNJ2BPP57105 145 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 RHOGP84095 191 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 MSMO1Q15800 293 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 TMEM69Q5SWH9 247 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 HAPLN4Q86UW8 402 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 SPAG16Q8N0X2 631 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 FYTTD1Q96QD9 318 aaKnown RBP15.88■□□□□ 0.13
CLN3-219ENST00000565778 AIFM2Q9BRQ8 373 aa15.88■□□□□ 0.13
CLN3-219ENST00000565778 DPPA5A6NC42 116 aa15.87■□□□□ 0.13
CLN3-219ENST00000565778 FAM223BA6NKX1 122 aa15.87■□□□□ 0.13
CLN3-219ENST00000565778 MAS1LP35410 378 aa15.87■□□□□ 0.13
CLN3-219ENST00000565778 RPL27AP46776 148 aaKnown RBP15.87■□□□□ 0.13
CLN3-219ENST00000565778 RPEL1Q2QD12 228 aa15.87■□□□□ 0.13
CLN3-219ENST00000565778 FAM223AQ8IWN6 122 aa15.87■□□□□ 0.13
CLN3-219ENST00000565778 PUSL1Q8N0Z8 303 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms