RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TCF21O43680 179 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 ATG12O94817 140 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 CDS2O95674 445 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 NQO2P16083 231 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 MMDQ15546 238 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 POU2AF1Q16633 256 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 TRIM16LQ309B1 348 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 SP6Q3SY56 376 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 FBLN7Q53RD9 439 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 IL22RA2Q969J5 263 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 KIAA1456Q9P272 454 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 MOB4Q9Y3A3 225 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 NIPBLQ6KC79 2804 aaeCLIP16.48■□□□□ 0.23
CLN3-212ENST00000564574 M0QZK8 103 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 FGF16O43320 207 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 S1PR2O95136 353 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 NDUFA3O95167 84 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 RAB25P57735 213 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 DHRS2Q13268 280 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 VMA21Q3ZAQ7 101 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 CHPT1Q8WUD6 406 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 RITA1Q96K30 269 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 TMEM56Q96MV1 263 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 CHIAQ9BZP6 476 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 BEX1Q9HBH7 125 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 ESM1Q9NQ30 184 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 TMEM56-RWDD3S4R434 201 aa16.47■□□□□ 0.23
CLN3-212ENST00000564574 IGLV2-23P01705 113 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 UBE2KP61086 200 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 ERVK-16P61578 105 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 PSG5Q15238 335 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 TMEM219Q86XT9 240 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 ZNF695Q8IW36 515 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 CADM3Q8N126 398 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 LGI3Q8N145 548 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 LRTM2Q8N967 370 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 VSTM2AQ8TAG5 236 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 R3HDM4Q96D70 268 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 GPN1Q9HCN4 374 aaPredicted RBP16.46■□□□□ 0.23
CLN3-212ENST00000564574 PLSCR3Q9NRY6 295 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 TNFRSF19Q9NS68 423 aa16.46■□□□□ 0.23
CLN3-212ENST00000564574 MXRA5Q9NR99 2828 aa16.46■□□□□ 0.22
CLN3-212ENST00000564574 DUXBA0A1W2PPF3 345 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 NCBP2LA6PVI3 153 aaKnown RBP16.45■□□□□ 0.22
CLN3-212ENST00000564574 SRRM4A7MD48 611 aaKnown RBP16.45■□□□□ 0.22
CLN3-212ENST00000564574 RRHO14718 337 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 DUS4LO95620 317 aaKnown RBP16.45■□□□□ 0.22
CLN3-212ENST00000564574 IGKV1-39P01597 117 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 IGKV1D-39P04432 117 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 RNASE1P07998 156 aaKnown RBP16.45■□□□□ 0.22
CLN3-212ENST00000564574 CNTFRP26992 372 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 F2RL1P55085 397 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 RPL15P61313 204 aaKnown RBP16.45■□□□□ 0.22
CLN3-212ENST00000564574 TEX45Q8NA69 505 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 COQ8AQ8NI60 647 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 ZNF431Q8TF32 576 aaPredicted RBP16.45■□□□□ 0.22
CLN3-212ENST00000564574 CASTOR1Q8WTX7 329 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 RBPMSQ93062 196 aaKnown RBP16.45■□□□□ 0.22
CLN3-212ENST00000564574 RBMXL1Q96E39 390 aaKnown RBP16.45■□□□□ 0.22
CLN3-212ENST00000564574 RHOVQ96L33 236 aa16.45■□□□□ 0.22
CLN3-212ENST00000564574 A0A0B4J2A0 478 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 MARCH11A6NNE9 402 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 GPR137BO60478 399 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 UBA52P62987 128 aaKnown RBP16.44■□□□□ 0.22
CLN3-212ENST00000564574 TMEM268Q5VZI3 342 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 SELENOHQ8IZQ5 122 aaKnown RBP16.44■□□□□ 0.22
CLN3-212ENST00000564574 FAM71E2Q8N5Q1 922 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 Q8N9W7 124 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 DMBX1Q8NFW5 382 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 SEC22AQ96IW7 307 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 SEC22CQ9BRL7 303 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 BET1LQ9NYM9 111 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 SHPKQ9UHJ6 478 aa16.44■□□□□ 0.22
CLN3-212ENST00000564574 SNRPGP15A8MWD9 76 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 SLC25A17O43808 307 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 CHST1O43916 411 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 CRYGBP07316 175 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 SAA1P0DJI8 122 aaPredicted RBP16.43■□□□□ 0.22
CLN3-212ENST00000564574 C5orf64Q2M2E5 130 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 ANKRD55Q3KP44 614 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 PUSL1Q8N0Z8 303 aaKnown RBP16.43■□□□□ 0.22
CLN3-212ENST00000564574 C5orf56Q8N8D9 126 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 OR52B4Q8NGK2 314 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 OR4A5Q8NH83 315 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 LHFPL5Q8TAF8 219 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 MITD1Q8WV92 249 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 DUX5Q96PT3 197 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 PHB2Q99623 299 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 RASL11BQ9BPW5 248 aa16.43■□□□□ 0.22
CLN3-212ENST00000564574 METTL1Q9UBP6 276 aaKnown RBP16.43■□□□□ 0.22
CLN3-212ENST00000564574 TRIM77I1YAP6 450 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 CREBL2O60519 120 aaPredicted RBP16.42■□□□□ 0.22
CLN3-212ENST00000564574 OR2A4O95047 310 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 KRASP01116 189 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 G6PCP35575 357 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 AKR1C2P52895 323 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 PLGLAQ15195 96 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 OR4A47Q6IF82 309 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 FAM219AQ8IW50 185 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 LSM10Q969L4 123 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms