RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CBX5P45973 191 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 CDK10Q15131 360 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 C11orf87Q6NUJ2 197 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 ACSM6Q6P461 480 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 IDO2Q6ZQW0 420 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 HOGA1Q86XE5 327 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 MMD2Q8IY49 270 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 TSPAN14Q8NG11 270 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 OR6Q1Q8NGQ2 317 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 OR4S2Q8NH73 311 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 TCTEX1D2Q8WW35 142 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 SRSF12Q8WXF0 261 aaKnown RBP12.98□□□□□ -0.33
CLK3-210ENST00000563112 S100A16Q96FQ6 103 aaKnown RBP12.98□□□□□ -0.33
CLK3-210ENST00000563112 OR9G9P0C7N8 305 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 SAA1P0DJI8 122 aaPredicted RBP12.97□□□□□ -0.33
CLK3-210ENST00000563112 APELAP0DMC3 54 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 FCGR2CP31995 323 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 RPL30P62888 115 aaKnown RBP12.97□□□□□ -0.33
CLK3-210ENST00000563112 OR2B11Q5JQS5 317 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 ZNF66Q6ZN08 573 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 OVCH2Q7RTZ1 564 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 MFSD4AQ8N468 514 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 GVQW1Q8N7I0 195 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 VSTM2AQ8TAG5 236 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 USMG5Q96IX5 58 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 SPIN2AQ99865 258 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 SPIN2BQ9BPZ2 258 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 ZNF430Q9H8G1 570 aaPredicted RBP12.97□□□□□ -0.33
CLK3-210ENST00000563112 DNAH9Q9NYC9 4486 aa12.97□□□□□ -0.33
CLK3-210ENST00000563112 ANKRD34BA5PLL1 514 aa12.96□□□□□ -0.33
CLK3-210ENST00000563112 IGLV2-14P01704 120 aa12.96□□□□□ -0.33
CLK3-210ENST00000563112 MRGPRG-AS1Q2M3A8 158 aa12.96□□□□□ -0.33
CLK3-210ENST00000563112 SECTM1Q8WVN6 248 aa12.96□□□□□ -0.33
CLK3-210ENST00000563112 TAS2R8Q9NYW2 309 aa12.96□□□□□ -0.33
CLK3-210ENST00000563112 SMAD5-AS1Q9Y6J3 95 aa12.96□□□□□ -0.33
CLK3-210ENST00000563112 TENM3Q9P273 2699 aa12.96□□□□□ -0.33
CLK3-210ENST00000563112 OR2A4O95047 310 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 RPS19P39019 145 aaKnown RBP12.95□□□□□ -0.34
CLK3-210ENST00000563112 KIR2DS2P43631 304 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 LSM3P62310 102 aaKnown RBP12.95□□□□□ -0.34
CLK3-210ENST00000563112 MSMO1Q15800 293 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 TATDN3Q17R31 274 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 ZBTB34Q8NCN2 500 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 ADAD2Q8NCV1 583 aaKnown RBP12.95□□□□□ -0.34
CLK3-210ENST00000563112 OR13F1Q8NGS4 319 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 YIPF6Q96EC8 236 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 OR2A7Q96R45 310 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 IFT46Q9NQC8 304 aa12.95□□□□□ -0.34
CLK3-210ENST00000563112 PEF1Q9UBV8 284 aaKnown RBP12.95□□□□□ -0.34
CLK3-210ENST00000563112 XRCC3O43542 346 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 HRASP01112 189 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 PPYP01298 95 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 PTHLHP12272 177 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 SPNP16150 400 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 UBE2NLQ5JXB2 153 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 ZNF343Q6P1L6 599 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 SLC25A42Q86VD7 318 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 ANKRD13BQ86YJ7 626 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 OR5AP2Q8NGF4 316 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 AIFM2Q9BRQ8 373 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 SLC5A7Q9GZV3 580 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 CCL28Q9NRJ3 127 aa12.94□□□□□ -0.34
CLK3-210ENST00000563112 FCER2P06734 321 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 GP9P14770 177 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 MAS1LP35410 378 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 TGFBR1P36897 503 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 EIF4EBP1Q13541 118 aaPredicted RBP12.93□□□□□ -0.34
CLK3-210ENST00000563112 VKORC1L1Q8N0U8 176 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 SAMD12Q8N8I0 201 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 TMEM167AQ8TBQ9 72 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 SNAPC3Q92966 411 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 RSRP1Q9BUV0 290 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 BATF3Q9NR55 127 aa12.93□□□□□ -0.34
CLK3-210ENST00000563112 DPPA5A6NC42 116 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 MEIS3P1A6NDR6 274 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 FAM223BA6NKX1 122 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 TNFSF12O43508 249 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 KBTBD11O94819 623 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 FXYD4P59646 89 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 RHOGP84095 191 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 DEFA5Q01523 94 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 ATP5G2Q06055 141 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 CATR1Q13166 79 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 DYRK1AQ13627 763 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 KLF5Q13887 457 aaPredicted RBP12.92□□□□□ -0.34
CLK3-210ENST00000563112 TMEM69Q5SWH9 247 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 FAM223AQ8IWN6 122 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 TTC9CQ8N5M4 171 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 GIMAP1Q8WWP7 306 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 BORCS5Q969J3 196 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 WWC2-AS2Q96NR7 200 aa12.92□□□□□ -0.34
CLK3-210ENST00000563112 RPL27AP46776 148 aaKnown RBP12.91□□□□□ -0.34
CLK3-210ENST00000563112 HERV-K104P61576 105 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 RPEL1Q2QD12 228 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 C10orf55Q5SWW7 151 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 SSX9Q7RTT3 188 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 SPAG16Q8N0X2 631 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 PUSL1Q8N0Z8 303 aaKnown RBP12.91□□□□□ -0.34
CLK3-210ENST00000563112 KCTD12Q96CX2 325 aaKnown RBP12.91□□□□□ -0.34
CLK3-210ENST00000563112 FYTTD1Q96QD9 318 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms