RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	OR1L8	Q8NGR8	309 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	OR5J2	Q8NH18	312 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF675	Q8TD23	568 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	RPS4Y2	Q8TD47	263 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	HAVCR2	Q8TDQ0	301 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	EEF1AKMT1	Q8WVE0	214 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC7A6	Q92536	515 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	FGF13	Q92913	245 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	GNPNAT1	Q96EK6	184 aa	Predicted RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	MRPS24	Q96EL2	167 aa	Known RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	KCTD7	Q96MP8	289 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	OR52B2	Q96RD2	323 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CCL13	Q99616	98 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	DHRS9	Q9BPW9	319 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	MIEN1	Q9BRT3	115 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM109	Q9BVC6	243 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	TIPIN	Q9BVW5	301 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	HDHD2	Q9H0R4	259 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	MAP1LC3A	Q9H492	121 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	XAGE1A	Q9HD64	81 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	TAAR3P	Q9P1P4	343 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	AK3	Q9UIJ7	227 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	HHLA3	Q9XRX5	114 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	POLR1D	Q9Y2S0	133 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	HDGFL3	Q9Y3E1	203 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	POLR3H	Q9Y535	204 aa	Predicted RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	RBM7	Q9Y580	266 aa	Known RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ATP6V1D	Q9Y5K8	247 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CR1	P17927	2039 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	SCN9A	Q15858	1988 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CHD5	Q8TDI0	1954 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CUL9	Q8IWT3	2517 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	KIAA2026	Q5HYC2	2103 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RGS12	O14924	1447 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	NUP160	Q12769	1436 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	NCKAP5	O14513	1909 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	TRAV7	A0A075B6U4	112 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	IGHV1-18	A0A0C4DH31	117 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A0J9YW62	118 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	C1orf232	A0A0U1RR37	186 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	OR51F1	A6NGY5	319 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	OR4C45	A6NMZ5	311 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435		A8MUN3	132 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	C21orf140	B9A014	251 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	DISC1	C4P0D8	188 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435		J3QQQ9	107 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	LST1	O00453	97 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	UBE2L6	O14933	153 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	PFDN6	O15212	129 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC16A4	O15374	487 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	SSNA1	O43805	119 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF737	O75373	536 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	DEXI	O95424	95 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	NAPSA	O96009	420 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	C1QA	P02745	245 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	TYMS	P04818	313 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	REG1A	P05451	166 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	BPGM	P07738	259 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	KRT7	P08729	469 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	OCM2	P0CE71	109 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	COX5B	P10606	129 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	PSMB8	P28062	276 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RPL12	P30050	165 aa	Known RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	CCR2	P41597	374 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	MAGEA2	P43356	314 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	REG1B	P48304	166 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	CDC34	P49427	236 aa	Predicted RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RAP1GDS1	P52306	607 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	TAS2R20	P59543	309 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	KRTAP10-4	P60372	401 aa	Predicted RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RAB5B	P61020	215 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RPL26	P61254	145 aa	Known RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	ERH	P84090	104 aa	Known RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	GLO1	Q04760	184 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	AKR1C1	Q04828	323 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	MLLT11	Q13015	90 aa	Predicted RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	PPP1R1A	Q13522	171 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435		Q1T7F1	81 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM31	Q5JXX7	168 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	SAPCD1	Q5SSQ6	148 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	CLVS2	Q5SYC1	327 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	CD200R1L	Q6Q8B3	271 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	LRRN1	Q6UXK5	716 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	COA5	Q86WW8	74 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	BAP18	Q8IXM2	172 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	UMODL1-AS1	Q8N2C9	162 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC22A24	Q8N4F4	322 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RPP25L	Q8N5L8	163 aa	Known RBP	0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	DEFB125	Q8N687	156 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	OTUD6B	Q8N6M0	293 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	UBL4B	Q8N7F7	174 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	OR13C8	Q8NGS7	320 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	OR2T27	Q8NH04	317 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF563	Q8TA94	476 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	PIGX	Q8TBF5	258 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RAB2B	Q8WUD1	216 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RNF133	Q8WVZ7	376 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	ASB17	Q8WXJ9	295 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	RAB8B	Q92930	207 aa		0.23	□□□□□ -2.37
SPG11-222	ENST00000560435	ROPN1L	Q96C74	230 aa		0.23	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms