RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PAFAH1B2P68402 229 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 HIST1H3AP68431 136 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF616Q08AN1 781 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SLC10A7Q0GE19 358 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ST3GAL3Q11203 375 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 FOXF1Q12946 379 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR5I1Q13606 314 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 IHHQ14623 411 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ATXN7L3Q14CW9 347 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ELOCQ15369 112 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR7A5Q15622 319 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 BSXQ3C1V8 233 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ACOT6Q3I5F7 207 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 BEX5Q5H9J7 111 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SOHLH1Q5JUK2 328 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 FAM27D1Q5T7N8 215 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 C9orf135Q5VTT2 229 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SDHAF4Q5VUM1 108 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 MFSD14CQ5VZR4 134 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ARL9Q6T311 187 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TMPPEQ6ZT21 453 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SMIM5Q71RC9 77 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 COX15Q7KZN9 410 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF101Q8IZC7 436 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CLDN19Q8N6F1 224 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CYB561D1Q8N8Q1 229 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF738Q8NE65 137 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SLC26A10Q8NG04 563 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR4D6Q8NGJ1 314 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR51A2Q8NGJ7 313 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR5D18Q8NGL1 313 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR13C2Q8NGS9 318 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR2T27Q8NH04 317 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR4X1Q8NH49 305 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR4S2Q8NH73 311 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 RGP1Q92546 391 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CDS1Q92903 461 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TSLPQ969D9 159 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 PTX4Q96A99 478 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SEH1LQ96EE3 360 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 BTF3L4Q96K17 158 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ALPK3Q96L96 1907 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM56Q96MV1 263 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SCGB3A2Q96PL1 93 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 YPEL2Q96QA6 119 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 RNF2Q99496 336 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 AIF1LQ9BQI0 150 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 GINS3Q9BRX5 216 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 HDHD3Q9BSH5 251 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 KRTAP4-1Q9BYQ7 146 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TBL1XR1Q9BZK7 514 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ULBP1Q9BZM6 244 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 PKIBQ9C010 78 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 RBKSQ9H477 322 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF430Q9H8G1 570 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CMC2Q9NRP2 79 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CBLN4Q9NTU7 201 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 FKBP11Q9NYL4 201 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SLC23A2Q9UGH3 650 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 NAGKQ9UJ70 344 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ST3GAL6Q9Y274 331 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 MEMO1Q9Y316 297 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 NOP16Q9Y3C1 178 aaKnown RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM56-RWDD3S4R434 201 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 PDCD11Q14690 1871 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 COL11A1P12107 1806 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TGIF2-C20orf24A0A0A6YYL0 155 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 BORCS7-ASMTA0A0B4J1R7 106 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TRAV1-1A0A0B4J248 108 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 IGHV2OR16-5A0A0B4J2B6 119 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 RBFOX3A6NFN3 312 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 NPIPA7E9PJI5 369 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 J3QLW9 94 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 HMGN4O00479 90 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CCL22O00626 93 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CXCL11O14625 94 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PIN1P1O15428 100 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 RAMP3O60896 148 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 RCBTB2O95199 551 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 SFT2D2O95562 160 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 HLA-AP01891 365 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CD3DP04234 171 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 REG1AP05451 166 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PFN1P07737 140 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 SRP19P09132 144 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 H2BFMP0C1H6 154 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 STAG3L3P0CL85 134 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PGA4P0DJD7 388 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PGA3P0DJD8 388 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PGA5P0DJD9 388 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 GIMD1P0DJR0 217 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 NPIPA8P0DM63 369 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 KCNE1P15382 129 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 SERPINA2P20848 420 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 MSR1P21757 451 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PYCR1P32322 319 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CEACAM3P40198 252 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 AQP2P41181 271 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 MAGEA5P43359 124 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 P2RY1P47900 373 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms