RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PRO1933Q9H354 126 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 BSNQ9UPA5 3926 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 TET2Q6N021 2002 aaPredicted RBP10.69□□□□□ -0.7
LDLR-207ENST00000558013 IFNL4K9M1U5 179 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 M0R1X1 148 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 RAB29O14966 203 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 NDUFS6O75380 124 aaKnown RBP10.69□□□□□ -0.7
LDLR-207ENST00000558013 OPN1MWP04001 364 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 OPN1MW2P0DN77 364 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 OPN1MW3P0DN78 364 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 MYOD1P15172 320 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 COX5AP20674 150 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 GCH1P30793 250 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 DUTP33316 252 aaKnown RBP10.69□□□□□ -0.7
LDLR-207ENST00000558013 FAM3BP58499 235 aaPredicted RBP10.69□□□□□ -0.7
LDLR-207ENST00000558013 SMIM21Q3B7S5 101 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 ZNF709Q8N972 641 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 ZBTB34Q8NCN2 500 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 PFDN5Q99471 154 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 HIST1H2BLQ99880 126 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 OR6C3Q9NZP0 311 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 DKK4Q9UBT3 224 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 IGHG3P01860 377 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 GALR1P47211 349 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 GPR12P47775 334 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 ZNF83P51522 516 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 TAAR6Q96RI8 345 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 ACTR3CQ9C0K3 210 aaPredicted RBP10.69□□□□□ -0.7
LDLR-207ENST00000558013 TIMM9Q9Y5J7 89 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 PKDREJQ9NTG1 2253 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 C11orf94C9JXX5 98 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 TNFSF13O75888 250 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 IFNA10P01566 189 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 ZNF718Q3SXZ3 478 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 ACSF3Q4G176 576 aaPredicted RBP10.68□□□□□ -0.7
LDLR-207ENST00000558013 CST9LP1Q5W188 147 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 ZNF114Q8NC26 417 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 OR13D1Q8NGV5 346 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 TMEM170AQ8WVE7 144 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 WFIKKN1Q96NZ8 548 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 DMRT1Q9Y5R6 373 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 H7BYZ3 331 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 SPINT2O43291 252 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 GYPAP02724 150 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 HNF1AP20823 631 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 CD1BP29016 333 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 TMEM37Q8WXS4 190 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 PACRGQ96M98 296 aaPredicted RBP10.68□□□□□ -0.7
LDLR-207ENST00000558013 GFOD1Q9NXC2 390 aa10.68□□□□□ -0.7
LDLR-207ENST00000558013 DSCAMO60469 2012 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 MORN2Q502X0 79 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 PRAMEF5Q5TYX0 476 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 SEM1Q6ZVN7 128 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 GCSAMQ8N6F7 178 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 DEFB124Q8NES8 71 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 PRR7Q8TB68 274 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 STARD4Q96DR4 205 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 LURAP1Q96LR2 239 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 NDUFB4O95168 129 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 KITLGP21583 273 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 CD82P27701 267 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 CDC34P49427 236 aaPredicted RBP10.67□□□□□ -0.7
LDLR-207ENST00000558013 SSMEM1Q8WWF3 244 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 HSD17B10Q99714 261 aaKnown RBP10.67□□□□□ -0.7
LDLR-207ENST00000558013 MRPL37Q9BZE1 423 aaKnown RBP10.67□□□□□ -0.7
LDLR-207ENST00000558013 ZNRD1Q9P1U0 126 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 SPRY3O43610 288 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 GNB1P62873 340 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 ATP6V1FQ16864 119 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 MIC13Q5XKP0 118 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 MOGAT3Q86VF5 341 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 TGIF2LYQ8IUE0 185 aa10.67□□□□□ -0.7
LDLR-207ENST00000558013 HEYLQ9NQ87 328 aaPredicted RBP10.67□□□□□ -0.7
LDLR-207ENST00000558013 ZNF71Q9NQZ8 489 aaPredicted RBP10.67□□□□□ -0.7
LDLR-207ENST00000558013 TMEM250H0YL14 139 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 AQP7O14520 342 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 VWC2Q2TAL6 325 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 ZNF66Q6ZN08 573 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 C22orf34Q6ZV56 151 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 OR2V2Q96R30 315 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 CTDSP1Q9GZU7 261 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 FUT9Q9Y231 359 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 A0A1B0GUS0 222 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 C1QTNF9P0C862 333 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 LOXL3P58215 753 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 GNB2P62879 340 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 DEFB109BQ30KR1 87 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 TREML4Q6UXN2 200 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 DEFB108BQ8NET1 73 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 S100PBPQ96BU1 408 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 SNRNP40Q96DI7 357 aaKnown RBP10.66□□□□□ -0.7
LDLR-207ENST00000558013 MS4A5Q9H3V2 200 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 SRD5A3Q9H8P0 318 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 CSMD1Q96PZ7 3565 aa10.66□□□□□ -0.7
LDLR-207ENST00000558013 TRBV20OR9-2A0A075B6H5 130 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 IGLV1-44P01699 117 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 HIST1H1BP16401 226 aaKnown RBP10.65□□□□□ -0.7
LDLR-207ENST00000558013 FAM90A1Q86YD7 464 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 FAM122AQ96E09 287 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 NEIL1Q96FI4 390 aaPredicted RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms