RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 R3HDM4Q96D70 268 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 MS4A10Q96PG2 267 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 ZNF407Q9C0G0 2248 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 RBFOX2O43251 390 aaKnown RBP eCLIP13.58□□□□□ -0.245e-15■■■■■ 33.3
SHMT2-232ENST00000557487 HPRT1P00492 218 aa13.58□□□□□ -0.24
SHMT2-232ENST00000557487 SPINK2P20155 84 aa13.58□□□□□ -0.24
SHMT2-232ENST00000557487 ATP5G3P48201 142 aa13.58□□□□□ -0.24
SHMT2-232ENST00000557487 OR10G8Q8NGN5 311 aa13.58□□□□□ -0.24
SHMT2-232ENST00000557487 CXXC4Q9H2H0 198 aa13.58□□□□□ -0.24
SHMT2-232ENST00000557487 FREM1Q5H8C1 2179 aa13.58□□□□□ -0.24
SHMT2-232ENST00000557487 SPINT2O43291 252 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 MT-CO2P00403 227 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 GRPP07492 148 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 TPPP2P59282 170 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 TLE1Q04724 770 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 SLC25A40Q8TBP6 338 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 ZCCHC14Q8WYQ9 949 aaKnown RBP13.57□□□□□ -0.24
SHMT2-232ENST00000557487 COQ2Q96H96 371 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 HES7Q9BYE0 225 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 C12orf49Q9H741 205 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 PCSK5Q92824 1860 aa13.57□□□□□ -0.24
SHMT2-232ENST00000557487 RAB4AP20338 218 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 GABRA2P47869 451 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 RANP62826 216 aaKnown RBP13.56□□□□□ -0.24
SHMT2-232ENST00000557487 RPL19P84098 196 aaKnown RBP13.56□□□□□ -0.24
SHMT2-232ENST00000557487 TEX38Q6PEX7 206 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 INO80CQ6PI98 192 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-232ENST00000557487 ACP7Q6ZNF0 438 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 OR5T1Q8NG75 326 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 CMTM2Q8TAZ6 248 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 QTRT1Q9BXR0 403 aaKnown RBP13.56□□□□□ -0.24
SHMT2-232ENST00000557487 POLR3KQ9Y2Y1 108 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-232ENST00000557487 ARL2-SNX15V9GYD0 113 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 CFAP54Q96N23 3096 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 TRBV9A0A0B4J1U6 114 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 SPAARA0A1B0GVQ0 90 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 C9JCJ5 164 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 EREGO14944 169 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 CRYAAP02489 173 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 SP1P08047 785 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 C1QTNF9P0C862 333 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 TIMP3P35625 211 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 KIR2DS2P43631 304 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 MEOX1P50221 254 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 AESQ08117 197 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 PSG7Q13046 419 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 MRGPRDQ8TDS7 321 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 SNHG12Q9BXW3 62 aa13.56□□□□□ -0.24
SHMT2-232ENST00000557487 TRAV38-1A0A0B4J264 116 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 LINC00473A8K010 186 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 A8MXE2 369 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 EDDM3BP56851 147 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 UBE2G2P60604 165 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 ESPL1Q14674 2120 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 SMIM21Q3B7S5 101 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 DCAF10Q5QP82 559 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 OR4A16Q8NH70 328 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 C11orf52Q96A22 123 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 C20orf144Q9BQM9 153 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 ZDHHC11Q9H8X9 412 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 OBP2BQ9NPH6 170 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 TMEM106BQ9NUM4 274 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 IL36BQ9NZH7 164 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 ARHGAP21Q5T5U3 1957 aa13.55□□□□□ -0.24
SHMT2-232ENST00000557487 FTH1P19P0C7X4 201 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 ARL14EPLP0DKL9 152 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 ERVK-16P61578 105 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 TREML4Q6UXN2 200 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 C11orf53Q8IXP5 236 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 PCNX2A6NKB5 2137 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 TRGV8A0A0C4DH27 118 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 GCH1P30793 250 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 DUTP33316 252 aaKnown RBP13.54□□□□□ -0.24
SHMT2-232ENST00000557487 VDAC2P45880 294 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-232ENST00000557487 CEBPDP49716 269 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-232ENST00000557487 MZT1Q08AG7 82 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 COX19Q49B96 90 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 PRAMEF5Q5TYX0 476 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 PRAMEF6Q5VXH4 476 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 TMEM256Q8N2U0 113 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 MDS2Q8NDY4 140 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 UHRF2Q96PU4 802 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 GGTLC1Q9BX51 225 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 JPT1Q9UK76 154 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 PSG11Q9UQ72 335 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 WDR87Q6ZQQ6 2873 aa13.54□□□□□ -0.24
SHMT2-232ENST00000557487 DMXL1Q9Y485 3027 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 PRSS46E5RG02 174 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 OR9G9P0C7N8 305 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 ADMP35318 185 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 GPR12P47775 334 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 TDGF1P3P51864 188 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 FOXF2Q12947 444 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 ZNF718Q3SXZ3 478 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 KLF14Q8TD94 323 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-232ENST00000557487 DERL1Q9BUN8 251 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 NPVFQ9HCQ7 196 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 DOCK10Q96BY6 2186 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 MED12LQ86YW9 2145 aa13.53□□□□□ -0.24
SHMT2-232ENST00000557487 LAMA1P25391 3075 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms