RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	GCH1	P30793	250 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	DUT	P33316	252 aa	Known RBP	13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	VDAC2	P45880	294 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	CEBPD	P49716	269 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	MZT1	Q08AG7	82 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	COX19	Q49B96	90 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	PRAMEF5	Q5TYX0	476 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	PRAMEF6	Q5VXH4	476 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	TMEM256	Q8N2U0	113 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	MDS2	Q8NDY4	140 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	UHRF2	Q96PU4	802 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	GGTLC1	Q9BX51	225 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	JPT1	Q9UK76	154 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	PSG11	Q9UQ72	335 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	PRSS46	E5RG02	174 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	OR9G9	P0C7N8	305 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	ADM	P35318	185 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	GPR12	P47775	334 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	TDGF1P3	P51864	188 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	FOXF2	Q12947	444 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	ZNF718	Q3SXZ3	478 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	KLF14	Q8TD94	323 aa	Predicted RBP	13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	DERL1	Q9BUN8	251 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	NPVF	Q9HCQ7	196 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	DOCK10	Q96BY6	2186 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	MED12L	Q86YW9	2145 aa		13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	COL27A1	Q8IZC6	1860 aa	Predicted RBP	13.53	□□□□□ -0.24
SHMT2-231	ENST00000557433	FNDC10	F2Z333	226 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	TNFSF13	O75888	250 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	AREG	P15514	252 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	RHOB	P62745	196 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	ZNF90	Q03938	601 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433		Q0VG73	95 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	RAB31	Q13636	194 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	C3AR1	Q16581	482 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	PRSS8	Q16651	343 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	TEX43	Q6ZNM6	134 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	ZNF114	Q8NC26	417 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	MGST2	Q99735	147 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	HEYL	Q9NQ87	328 aa	Predicted RBP	13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	PLA2G3	Q9NZ20	509 aa		13.52	□□□□□ -0.24
SHMT2-231	ENST00000557433	TRGV10	A0A0A0MS01	117 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	ZNF705F	A8MVS1	300 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	C15orf65	H3BRN8	121 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	YPEL1	O60688	119 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	CELA3B	P08861	270 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	ZNF705D	P0CH99	300 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	ZNF705B	P0CI00	300 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	CD46	P15529	392 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	EGR1	P18146	543 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	RPS16	P62249	146 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	ALKBH6	Q3KRA9	238 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	GCSAML	Q5JQS6	135 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	C1orf174	Q8IYL3	243 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	OR13A1	Q8NGR1	328 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	CORO2A	Q92828	525 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	YPEL2	Q96QA6	119 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	TBX15	Q96SF7	602 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	SFXN3	Q9BWM7	321 aa		13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	LSM4	Q9Y4Z0	139 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-231	ENST00000557433	TRBV20OR9-2	A0A075B6H5	130 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	CRYAB	P02511	175 aa	Known RBP	13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	ZNF883	P0CG24	379 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	CRISP2	P16562	243 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	GCHFR	P30047	84 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	TMEM183B	Q1AE95	376 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	SPINK9	Q5DT21	86 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	TMEM164	Q5U3C3	297 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	WDR82	Q6UXN9	313 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	LINC00696	Q6ZRV3	163 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	MYPOP	Q86VE0	399 aa	Predicted RBP	13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	OCC1	Q8TAD7	63 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	MS4A5	Q9H3V2	200 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	PATZ1	Q9HBE1	687 aa	Known RBP	13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	CBLN4	Q9NTU7	201 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	TRGV5	A0A0B4J1U4	118 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	SCO2	A0A1W2PP80	73 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	C9orf172	C9J069	976 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	WNT9B	O14905	357 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	GFRA3	O60609	400 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	MT-ND6	P03923	174 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	DEFA4	P12838	97 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	SSTR5	P35346	364 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	PLA2G5	P39877	138 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	TNFSF10	P50591	281 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	CR1L	Q2VPA4	569 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	FAM90A1	Q86YD7	464 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	PPP1R35	Q8TAP8	253 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	FER1L6-AS2	Q96M78	137 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	MIEN1	Q9BRT3	115 aa		13.51	□□□□□ -0.25
SHMT2-231	ENST00000557433	ITGB1BP1	O14713	200 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	FCGR3B	O75015	233 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	OR10J4	P0C629	311 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	IGHV1-2	P23083	117 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	MPV17	P39210	176 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	RPL29	P47914	159 aa	Known RBP	13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	LGALS4	P56470	323 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	MIC13	Q5XKP0	118 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	TMEM68	Q96MH6	324 aa		13.5	□□□□□ -0.25
SHMT2-231	ENST00000557433	GNB1L	Q9BYB4	327 aa		13.5	□□□□□ -0.25

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