RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PP6455Q8WZ26 134 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 RAB37Q96AX2 223 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 VGLL1Q99990 258 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 C1QTNF4Q9BXJ3 329 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 KLF16Q9BXK1 252 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-226ENST00000556825 MTCH1Q9NZJ7 389 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 V9GYV3 84 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 CER1O95813 267 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 IGKV1D-16P01601 117 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 CFHR2P36980 270 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 C22orf39Q6P5X5 142 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 GCSAMQ8N6F7 178 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 OR51E1Q8TCB6 317 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 OVCA2Q8WZ82 227 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 NAT6Q93015 286 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 PIGTQ969N2 578 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 TNFRSF19Q9NS68 423 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 COA3Q9Y2R0 106 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-226ENST00000556825 TNRC6AQ8NDV7 1962 aaKnown RBP11.6□□□□□ -0.55
SHMT2-226ENST00000556825 K7EN84 100 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 ANGPTL7O43827 346 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 DXOO77932 396 aaKnown RBP11.6□□□□□ -0.55
SHMT2-226ENST00000556825 RPL27P61353 136 aaKnown RBP11.6□□□□□ -0.55
SHMT2-226ENST00000556825 DLX2Q07687 328 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-226ENST00000556825 PDCD1Q15116 288 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 ZNF547Q8IVP9 402 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 TXNDC17Q9BRA2 123 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 PSENENQ9NZ42 101 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 LINC00312Q9Y6C7 94 aa11.6□□□□□ -0.55
SHMT2-226ENST00000556825 UBE2L5PA0A1B0GUS4 154 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 CD300LBA8K4G0 201 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 HLA-DOBP13765 273 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 COX5AP20674 150 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 GRB2P62993 217 aaKnown RBP11.59□□□□□ -0.55
SHMT2-226ENST00000556825 WFDC2Q14508 124 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 PRR22Q8IZ63 422 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 SH2D2AQ9NP31 389 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 OBP2AQ9NY56 170 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 SIGLEC8Q9NYZ4 499 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 HILPDAQ9Y5L2 63 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 LTBP2Q14767 1821 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 PCNX3Q9H6A9 2034 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 hADV38S2A0JD32 116 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 A4D1N5 150 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 LRRC30A6NM36 301 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 C11orf98E9PRG8 122 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 SNAI2O43623 268 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 SPINK4O60575 86 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 OR9G9P0C7N8 305 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 FAM120AOSQ5T036 256 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 RNASEKQ6P5S7 137 aaKnown RBP11.59□□□□□ -0.55
SHMT2-226ENST00000556825 STPG3Q8N7X2 389 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 MBNL3Q9NUK0 354 aaKnown RBP11.59□□□□□ -0.55
SHMT2-226ENST00000556825 LY96Q9Y6Y9 160 aa11.59□□□□□ -0.55
SHMT2-226ENST00000556825 SYNGR1O43759 233 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 IL11P20809 199 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 TMPRSS3P57727 454 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 C5orf47Q569G3 176 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 MOB1BQ7L9L4 216 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 YRDCQ86U90 279 aaKnown RBP11.58□□□□□ -0.56
SHMT2-226ENST00000556825 RDH5Q92781 318 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 VPREB3Q9UKI3 123 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 OR2W1Q9Y3N9 320 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 GTF3C1Q12789 2109 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 PHF3Q92576 2039 aaKnown RBP11.58□□□□□ -0.56
SHMT2-226ENST00000556825 COL4A6Q14031 1691 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 ZNF816-ZNF321PA0A0X1KG74 233 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 M0QXV9 152 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 DHHO43323 396 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 NEURL1O76050 574 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 DEFB103AP81534 67 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 CA13Q8N1Q1 262 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 OR2A1Q8NGT9 310 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 HOXB13Q92826 284 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-226ENST00000556825 CDIP1Q9H305 208 aa11.58□□□□□ -0.56
SHMT2-226ENST00000556825 IGKV1-9A0A0C4DH69 117 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 PPYP01298 95 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 MT-ATP8P03928 68 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 MGAT2Q10469 447 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 KISS1Q15726 138 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 ABHD17BQ5VST6 288 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 SLC25A47Q6Q0C1 308 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 LCNL1Q6ZST4 164 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 OR4A16Q8NH70 328 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 DDB2Q92466 427 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 FGF14Q92915 247 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 GCM1Q9NP62 436 aa11.57□□□□□ -0.56
SHMT2-226ENST00000556825 TECRQ9NZ01 308 aaKnown RBP11.57□□□□□ -0.56
SHMT2-226ENST00000556825 A0A087WX48 190 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 SYNGR2O43760 224 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 KLF7O75840 302 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-226ENST00000556825 NUDT14O95848 222 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 CD70P32970 193 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 SLC38A11Q08AI6 406 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 KLRD1Q13241 179 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 CEACAM16Q2WEN9 425 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 TMEM25Q86YD3 366 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 SPACA3Q8IXA5 215 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 TMEM54Q969K7 222 aa11.56□□□□□ -0.56
SHMT2-226ENST00000556825 TM2D2Q9BX73 214 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms