RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 RAB2BQ8WUD1 216 aa11.95□□□□□ -0.5
SHMT2-204ENST00000553324 DPF1Q92782 380 aa11.95□□□□□ -0.5
SHMT2-204ENST00000553324 FAM103A1Q9BTL3 118 aaKnown RBP11.95□□□□□ -0.5
SHMT2-204ENST00000553324 CCL28Q9NRJ3 127 aa11.95□□□□□ -0.5
SHMT2-204ENST00000553324 TPSG1Q9NRR2 321 aa11.95□□□□□ -0.5
SHMT2-204ENST00000553324 TAS2R8Q9NYW2 309 aa11.95□□□□□ -0.5
SHMT2-204ENST00000553324 ADAM30Q9UKF2 790 aa11.95□□□□□ -0.5
SHMT2-204ENST00000553324 PLXNB1O43157 2135 aa11.95□□□□□ -0.5
SHMT2-204ENST00000553324 ARPC1BO15143 372 aaKnown RBP11.94□□□□□ -0.5
SHMT2-204ENST00000553324 HRASP01112 189 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 RFX2P48378 723 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 FXYD4P59646 89 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 RPL30P62888 115 aaKnown RBP11.94□□□□□ -0.5
SHMT2-204ENST00000553324 PJVKQ0ZLH3 352 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 CATR1Q13166 79 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 PRSS8Q16651 343 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 MMD2Q8IY49 270 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 OR11H1Q8NG94 326 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 CD300LFQ8TDQ1 290 aa11.94□□□□□ -0.5
SHMT2-204ENST00000553324 A0A0G2JLM5 398 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 I3L521 148 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 SOX15O60248 233 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 BRI3O95415 125 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 PMP2P02689 132 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 OR8U8P0C7N1 319 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 RAB25P57735 213 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 FOXB2Q5VYV0 432 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 LPCAT3Q6P1A2 487 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 SNX29P2Q8IUI4 249 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 CLVS1Q8IUQ0 354 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-204ENST00000553324 LYSMD2Q8IV50 215 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 CMTM1Q8IZ96 169 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 POC5Q8NA72 575 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 OR1N2Q8NGR9 330 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 ZNF2Q9BSG1 426 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-204ENST00000553324 ZNF355PQ9NSJ1 428 aa11.93□□□□□ -0.5
SHMT2-204ENST00000553324 MSGN1A6NI15 193 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 RBFOX2O43251 390 aaKnown RBP eCLIP11.92□□□□□ -0.55e-15■■■■■ 33.3
SHMT2-204ENST00000553324 NOL3O60936 208 aaKnown RBP11.92□□□□□ -0.5
SHMT2-204ENST00000553324 OR2A4O95047 310 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 SAA1P0DJI8 122 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-204ENST00000553324 HLA-DMAP28067 261 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 RCVRNP35243 200 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 TSPAN5P62079 268 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 ZNF616Q08AN1 781 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 FHL3Q13643 280 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 TNXAQ16473 311 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 DEFB136Q30KP8 78 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 OR2B11Q5JQS5 317 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 MOB3AQ96BX8 217 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 DUX3Q96PT4 197 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 OR2A7Q96R45 310 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 PHB2Q99623 299 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 SPIN2AQ99865 258 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 SPIN2BQ9BPZ2 258 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 GNB4Q9HAV0 340 aa11.92□□□□□ -0.5
SHMT2-204ENST00000553324 TNFSF12O43508 249 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 HPRT1P00492 218 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 TRGV3P03979 118 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 S100GP29377 79 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 GNRHRP30968 328 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 HRH1P35367 487 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 MAS1LP35410 378 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 TPPP2P59282 170 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 SSBP2P81877 361 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-204ENST00000553324 IDO2Q6ZQW0 420 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 ZNF818PQ6ZRF7 136 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 TMEM17Q86X19 198 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 SPAG16Q8N0X2 631 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 OR5T1Q8NG75 326 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 RHOVQ96L33 236 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 MS4A10Q96PG2 267 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 ZNF430Q9H8G1 570 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-204ENST00000553324 EXTL2Q9UBQ6 330 aa11.91□□□□□ -0.5
SHMT2-204ENST00000553324 MPPED1O15442 326 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 RGS5O15539 181 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 LGALS1P09382 135 aaKnown RBP11.9□□□□□ -0.5
SHMT2-204ENST00000553324 BRWD1-AS2P59051 145 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 TAS2R31P59538 309 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 EGFEM1PQ0D2K5 195 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 MRGPRG-AS1Q2M3A8 158 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 SLC25A42Q86VD7 318 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 OR4A5Q8NH83 315 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 SRSF12Q8WXF0 261 aaKnown RBP11.9□□□□□ -0.5
SHMT2-204ENST00000553324 USMG5Q96IX5 58 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 OR5B12Q96R08 314 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 RABL2AQ9UBK7 228 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-204ENST00000553324 RABL2BQ9UNT1 228 aa11.9□□□□□ -0.5
SHMT2-204ENST00000553324 C13orf42A0A1B0GVH6 325 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 LINC01619G3V211 115 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 KBTBD11O94819 623 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 HSPB1P04792 205 aaKnown RBP11.89□□□□□ -0.51
SHMT2-204ENST00000553324 IFNA6P05013 189 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 NQO2P16083 231 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 MRPS10P82664 201 aaKnown RBP11.89□□□□□ -0.51
SHMT2-204ENST00000553324 SPCS2Q15005 226 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 VAX1Q5SQQ9 334 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 C9orf66Q5T8R8 295 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 AADACL3Q5VUY0 350 aa11.89□□□□□ -0.51
SHMT2-204ENST00000553324 PUSL1Q8N0Z8 303 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms