RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 LSM10Q969L4 123 aaKnown RBP13.21□□□□□ -0.29
CUX1-211ENST00000546411 LIME1Q9H400 295 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 NPVFQ9HCQ7 196 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 HIF1ANQ9NWT6 349 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 IGKV3D-15A0A087WSY6 115 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 OR10J1P30954 320 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 KIR2DS2P43631 304 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 TOMM20LQ6UXN7 152 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 PACRGQ96M98 296 aaPredicted RBP13.21□□□□□ -0.29
CUX1-211ENST00000546411 TMEM56-RWDD3S4R434 201 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 HSBP1L1C9JCN9 74 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 K7N7A8 449 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 SELLP14151 372 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 SPCS3P61009 180 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 WFIKKN1Q96NZ8 548 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 WDR61Q9GZS3 305 aaKnown RBP13.21□□□□□ -0.29
CUX1-211ENST00000546411 TCF19Q9Y242 345 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 ARL3P36405 182 aa13.21□□□□□ -0.3
CUX1-211ENST00000546411 LYZP61626 148 aa13.21□□□□□ -0.3
CUX1-211ENST00000546411 TFF3Q07654 80 aa13.21□□□□□ -0.3
CUX1-211ENST00000546411 C20orf204Q6ZNR8 217 aa13.21□□□□□ -0.3
CUX1-211ENST00000546411 LINC00518Q8N0U6 118 aa13.21□□□□□ -0.3
CUX1-211ENST00000546411 INSIG2Q9Y5U4 225 aa13.21□□□□□ -0.3
CUX1-211ENST00000546411 ACSF3Q4G176 576 aaPredicted RBP13.2□□□□□ -0.3
CUX1-211ENST00000546411 FKBP11Q9NYL4 201 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 PRNDQ9UKY0 176 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 OTOGLQ3ZCN5 2332 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 B4DEV8 164 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 RTP5Q14D33 572 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 MS4A10Q96PG2 267 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 SIRT7Q9NRC8 400 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 ZNF106Q9H2Y7 1883 aaKnown RBP13.2□□□□□ -0.3
CUX1-211ENST00000546411 OR4X1Q8NH49 305 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 LURAP1Q96LR2 239 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 ALPK3Q96L96 1907 aa13.2□□□□□ -0.3
CUX1-211ENST00000546411 ETV2O00321 342 aaPredicted RBP13.19□□□□□ -0.3
CUX1-211ENST00000546411 CHEK1O14757 476 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 HSBP1O75506 76 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 SLC35E4Q6ICL7 350 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 SGK494Q96LW2 274 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 MS4A5Q9H3V2 200 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 SMDT1Q9H4I9 107 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 RANP62826 216 aaKnown RBP13.19□□□□□ -0.3
CUX1-211ENST00000546411 ID3Q02535 119 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 PARLQ9H300 379 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 REG1AP05451 166 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 CT45A10P0DMU9 189 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 TECRQ9NZ01 308 aaKnown RBP13.19□□□□□ -0.3
CUX1-211ENST00000546411 MALRD1Q5VYJ5 2156 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 CEP295Q9C0D2 2601 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 LTBP2Q14767 1821 aa13.19□□□□□ -0.3
CUX1-211ENST00000546411 IER3P46695 156 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 PAX5Q02548 391 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 TMEM42Q69YG0 159 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 ZNF383Q8NA42 475 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 MEGF10Q96KG7 1140 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 ZNF586Q9NXT0 402 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 HELTA6NFD8 242 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 SLC25A17O43808 307 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 OR4D5Q8NGN0 318 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 OR1L8Q8NGR8 309 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 ZNF714Q96N38 554 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 VSIRQ9H7M9 311 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 CRIM1Q9NZV1 1036 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 YLPM1P49750 1951 aaKnown RBP13.18□□□□□ -0.3
CUX1-211ENST00000546411 A0A1W2PN81 502 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 K7EQM0 130 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 SRP19P09132 144 aaKnown RBP13.18□□□□□ -0.3
CUX1-211ENST00000546411 ARL14EPLP0DKL9 152 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 AP1S3Q96PC3 154 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 LPAR2Q9HBW0 351 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 SERTM2A0A1B0GWG4 89 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 SMIM6P0DI80 62 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 HOXB1P14653 301 aaPredicted RBP13.18□□□□□ -0.3
CUX1-211ENST00000546411 WDR82Q6UXN9 313 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 TMEM171Q8WVE6 324 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 SRD5A3Q9H8P0 318 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 TIMM9Q9Y5J7 89 aa13.18□□□□□ -0.3
CUX1-211ENST00000546411 CCL21O00585 134 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 CDX4O14627 284 aaPredicted RBP13.17□□□□□ -0.3
CUX1-211ENST00000546411 CXorf1O96002 111 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 NAPSAO96009 420 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 ZNF324BQ6AW86 544 aaPredicted RBP13.17□□□□□ -0.3
CUX1-211ENST00000546411 VSTM2AQ8TAG5 236 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 ZNF503-AS2A6NEH8 195 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 H3BTX0 84 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 ZNF525Q8N782 197 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 OR1L4Q8NGR5 311 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 METRNQ9UJH8 293 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 PTPRQQ9UMZ3 2332 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 CRISP2P16562 243 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 CSRP1P21291 193 aaKnown RBP13.17□□□□□ -0.3
CUX1-211ENST00000546411 GLRXP35754 106 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 HERPUD1Q15011 391 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 DPPA3Q6W0C5 159 aa13.17□□□□□ -0.3
CUX1-211ENST00000546411 A0A0G2JRQ6 117 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 IQCF6A8MYZ5 107 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 FAM90A26D6RGX4 464 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 PRRX1P54821 245 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 DNM1P46Q6ZS02 220 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms