RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 MRPL18Q9H0U6 180 aaKnown RBP6.69□□□□□ -1.34
VPS13D-211ENST00000543710 PEF1Q9UBV8 284 aaKnown RBP6.69□□□□□ -1.34
VPS13D-211ENST00000543710 H3BMH7 237 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 SLC25A34Q6PIV7 304 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 MOGAT3Q86VF5 341 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 C1QL4Q86Z23 238 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 CACNG8Q8WXS5 425 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 RAX2Q96IS3 184 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 TMEM56-RWDD3S4R434 201 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 TRAV8-7A0A075B6U6 113 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 A0A1W2PR77 199 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 ZNF98A6NK75 572 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 UBE2L6O14933 153 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 ATP5LO75964 103 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 P2RY4P51582 365 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 PLAURQ03405 335 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 CD69Q07108 199 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 FAM53AQ6NSI3 398 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-211ENST00000543710 OSR1Q8TAX0 266 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-211ENST00000543710 KCNK7Q9Y2U2 307 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 LY96Q9Y6Y9 160 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 A8MXK9 166 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 OR2H2O95918 312 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 IGKV1D-16P01601 117 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 EFNA4P52798 201 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 FAM181BA6NEQ2 426 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 IER3P46695 156 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 HBBP68871 147 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 EFNB1P98172 346 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 WDYHV1Q96HA8 205 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 SGK494Q96LW2 274 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 F5P12259 2224 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 BRWD3Q6RI45 1802 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 F5H697 171 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 IGFBP3P17936 291 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-211ENST00000543710 PSG4Q00888 419 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 FUT5Q11128 374 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 OTPQ5XKR4 325 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 SCGB1D4Q6XE38 83 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 Q8NFD4 153 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 MRAPQ8TCY5 172 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 GATAD1Q8WUU5 269 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 MRGPRFQ96AM1 343 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 OPN3Q9H1Y3 402 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-211ENST00000543710 DNAJC4Q9NNZ3 241 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 KLHDC2Q9Y2U9 406 aa6.68□□□□□ -1.34
VPS13D-211ENST00000543710 IZUMO1RA6ND01 250 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 F8VVB4 439 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 F8VWA3 439 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SIGLEC5O15389 551 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SMIM13P0DJ93 91 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 LGALS3P17931 250 aaKnown RBP6.67□□□□□ -1.34
VPS13D-211ENST00000543710 C2orf68Q2NKX9 166 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 NSUN5P1Q3KNT7 163 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SPATA46Q5T0L3 261 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 BOD1L2Q8IYS8 172 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 CHCHD1Q96BP2 118 aaKnown RBP6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SLC25A38Q96DW6 304 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 TSC2P49815 1807 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SPRED2Q7Z698 418 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 TNFRSF14Q92956 283 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 TBX15Q96SF7 602 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 hCG_38984A0A1B0GV85 526 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 LMO1P25800 156 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 ATP5G2Q06055 141 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 PIGYQ3MUY2 71 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 FAM71F2Q6NXP2 309 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 OR52E5Q8NH55 327 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 OR9G1Q8NH87 305 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SPAG8Q99932 426 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-211ENST00000543710 ASXL3Q9C0F0 2248 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 PLXNA3P51805 1871 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 COL4A1P02462 1669 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 CFPP27918 469 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 UQCRFS1P47985 274 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 NANOS3P60323 173 aaKnown RBP6.67□□□□□ -1.34
VPS13D-211ENST00000543710 LRTM2Q8N967 370 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 LRRC75AQ8NAA5 344 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SPANXCQ9NY87 97 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SMPXQ9UHP9 88 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 SHROOM3Q8TF72 1996 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 A0A1W2PRD5 423 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 A0A1W2PRF3 423 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 A0A1W2PRM7 423 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 OR2W5A6NFC9 320 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 IQCF6A8MYZ5 107 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 FNDC10F2Z333 226 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 AGAP20933 346 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 DDTP30046 118 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 LEMD1Q68G75 181 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 CYP2G1PQ6ZSU1 146 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 C10orf111Q8N326 155 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 GPR146Q96CH1 333 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 RARRES2Q99969 163 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 OTORQ9NRC9 128 aa6.67□□□□□ -1.34
VPS13D-211ENST00000543710 CD5P06127 495 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 LINC00869P0C866 280 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 ATP1A1-AS1Q5TC04 95 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 TP53RKQ96S44 253 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 OVOL2Q9BRP0 275 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms