RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 MLANAQ16655 118 aa11.29□□□□□ -0.6
PTPN1-202ENST00000541713 TMEM241Q24JQ0 296 aa11.29□□□□□ -0.6
PTPN1-202ENST00000541713 BSXQ3C1V8 233 aa11.29□□□□□ -0.6
PTPN1-202ENST00000541713 C22orf34Q6ZV56 151 aa11.29□□□□□ -0.6
PTPN1-202ENST00000541713 WDR31Q8NA23 367 aa11.29□□□□□ -0.6
PTPN1-202ENST00000541713 CCL13Q99616 98 aa11.29□□□□□ -0.6
PTPN1-202ENST00000541713 SS18L1O75177 396 aaPredicted RBP11.28□□□□□ -0.6
PTPN1-202ENST00000541713 NDUFB7P17568 137 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 CXXC4Q9H2H0 198 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 PROCRQ9UNN8 238 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 IGHV1-18A0A0C4DH31 117 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 BTBD17A6NE02 478 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 C11orf94C9JXX5 98 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 SMIM21Q3B7S5 101 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 FAM78BQ5VT40 261 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 OR5B12Q96R08 314 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 IGHV2OR16-5A0A0B4J2B6 119 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.28□□□□□ -0.6
PTPN1-202ENST00000541713 IFNA1P01562 189 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 FOLR2P14207 255 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 GALR1P47211 349 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 ZNF146Q15072 292 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 UNQ6494/PRO21346Q6UXR6 183 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 Q8IYB0 196 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 SDF2L1Q9HCN8 221 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 GCM1Q9NP62 436 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 WIPI2Q9Y4P8 454 aa11.28□□□□□ -0.6
PTPN1-202ENST00000541713 RNF212BA8MTL3 300 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 SMIM6P0DI80 62 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 GZMHP20718 246 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 B2MP61769 119 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 SPATA31B1PQ5VZV4 182 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 TCF23Q7RTU1 214 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 PINX1Q96BK5 328 aaKnown RBP11.27□□□□□ -0.61
PTPN1-202ENST00000541713 NPCDR1Q9BY65 106 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 ZNF71Q9NQZ8 489 aaPredicted RBP11.27□□□□□ -0.61
PTPN1-202ENST00000541713 PROP1O75360 226 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 GYPAP02724 150 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 C1QTNF9P0C862 333 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 Q6ZS49 121 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 MRGPRGQ86SM5 289 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 FAM216BQ8N7L0 139 aa11.27□□□□□ -0.61
PTPN1-202ENST00000541713 LSM10Q969L4 123 aaKnown RBP11.27□□□□□ -0.61
PTPN1-202ENST00000541713 DUXBA0A1W2PPF3 345 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 CDC34P49427 236 aaPredicted RBP11.26□□□□□ -0.61
PTPN1-202ENST00000541713 C1orf229Q6ZS94 237 aaPredicted RBP11.26□□□□□ -0.61
PTPN1-202ENST00000541713 MALRD1Q5VYJ5 2156 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 IGKV1D-17A0A075B6S4 117 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 IQCF6A8MYZ5 107 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 COX5AP20674 150 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 DBX2Q6ZNG2 339 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 MOB1BQ7L9L4 216 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 IL22RA2Q969J5 263 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 ACTR3CQ9C0K3 210 aaPredicted RBP11.26□□□□□ -0.61
PTPN1-202ENST00000541713 HOXA5P20719 270 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 RPL23P62829 140 aaKnown RBP11.26□□□□□ -0.61
PTPN1-202ENST00000541713 INO80CQ6PI98 192 aaPredicted RBP11.26□□□□□ -0.61
PTPN1-202ENST00000541713 WFDC8Q8IUA0 241 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 ZNF114Q8NC26 417 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 LRFN3Q9BTN0 628 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 TMEM147Q9BVK8 224 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 ZDHHC11Q9H8X9 412 aa11.26□□□□□ -0.61
PTPN1-202ENST00000541713 MBNL3Q9NUK0 354 aaKnown RBP11.26□□□□□ -0.61
PTPN1-202ENST00000541713 IGHV3-21A0A0B4J1V1 117 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 PPP5D1E7EU14 171 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 PPIHO43447 177 aaKnown RBP11.25□□□□□ -0.61
PTPN1-202ENST00000541713 FAM216AQ8WUB2 273 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 S1PR3Q99500 378 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 PARD6AQ9NPB6 346 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 CISD1Q9NZ45 108 aaKnown RBP11.25□□□□□ -0.61
PTPN1-202ENST00000541713 ZNF320A2RRD8 509 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 XKRY2A2RUG3 117 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 MMP23AO75900 390 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 CD1BP29016 333 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 CDX1P47902 265 aaPredicted RBP11.25□□□□□ -0.61
PTPN1-202ENST00000541713 ERVK-16P61578 105 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 BHLHA15Q7RTS1 189 aaPredicted RBP11.25□□□□□ -0.61
PTPN1-202ENST00000541713 SLC35E3Q7Z769 313 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 OR4X1Q8NH49 305 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 POM121Q96HA1 1249 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 MEGF10Q96KG7 1140 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 PACRGQ96M98 296 aaPredicted RBP11.25□□□□□ -0.61
PTPN1-202ENST00000541713 IER2Q9BTL4 223 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 TMPRSS2O15393 492 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 OR10J4P0C629 311 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 LMO1P25800 156 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 LINC00596Q86U02 117 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 H1FXQ92522 213 aaKnown RBP11.25□□□□□ -0.61
PTPN1-202ENST00000541713 SARAFQ96BY9 339 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 SGK494Q96LW2 274 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 CLCF1Q9UBD9 225 aa11.25□□□□□ -0.61
PTPN1-202ENST00000541713 GRIFINA4D1Z8 144 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 SLC17A3O00476 420 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 FOXH1O75593 365 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 USF2Q15853 346 aaPredicted RBP11.24□□□□□ -0.61
PTPN1-202ENST00000541713 IMMP2LQ96T52 175 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 MS4A5Q9H3V2 200 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 DSCAMO60469 2012 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 ARL14EPLP0DKL9 152 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 NPPCP23582 126 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms