RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 RAB2AP61019 212 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 SKP2Q13309 424 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 APOFQ13790 326 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 SYCP1Q15431 976 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 ZBTB6Q15916 424 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 EXOC3L4Q17RC7 722 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 ACSBG2Q5FVE4 666 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 OR10J3Q5JRS4 329 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 NIPAL1Q6NVV3 410 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 NOXRED1Q6NXP6 359 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 ZNF767PQ75MW2 155 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 FAM19A3Q7Z5A8 133 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 OR11G2Q8NGC1 345 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 OR10P1Q8NGE3 313 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 CD200R1Q8TD46 325 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 LMX1AQ8TE12 382 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 PDCD6IPQ8WUM4 868 aaKnown RBP1.01□□□□□ -2.25
PRKDC-210ENST00000541488 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.01□□□□□ -2.25
PRKDC-210ENST00000541488 CYTH2Q99418 400 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 TSSK6Q9BXA6 273 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 OR51E2Q9H255 320 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 OR52A5Q9H2C5 316 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 ZNF286AQ9HBT8 521 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 DMAC2Q9NW81 257 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 ANKHD1Q8IWZ3 2542 aaKnown RBP1.01□□□□□ -2.25
PRKDC-210ENST00000541488 NIPBLQ6KC79 2804 aaeCLIP1.01□□□□□ -2.25
PRKDC-210ENST00000541488 PLXNA4Q9HCM2 1894 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 SPEF2Q9C093 1822 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 SVEP1Q4LDE5 3571 aa1.01□□□□□ -2.25
PRKDC-210ENST00000541488 BSNQ9UPA5 3926 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 APCP25054 2843 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 A8MWP6 167 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 EFCAB9A8MZ26 197 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 F5H5T6 163 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 LIN7AO14910 233 aaPredicted RBP1□□□□□ -2.25
PRKDC-210ENST00000541488 POLR3GO15318 223 aaPredicted RBP1□□□□□ -2.25
PRKDC-210ENST00000541488 SYNGR1O43759 233 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 CRTAPO75718 401 aaPredicted RBP1□□□□□ -2.25
PRKDC-210ENST00000541488 EPPINO95925 133 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 SLC35E2BP0CK96 405 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 CTSEP14091 401 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 ACTR1BP42025 376 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 HADHBP55084 474 aaKnown RBP1□□□□□ -2.25
PRKDC-210ENST00000541488 OR10A3P58181 314 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 FAM3AP98173 230 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 GTF2BQ00403 316 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 RAB31Q13636 194 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 OR8G1Q15617 311 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 RBM48Q5RL73 367 aaKnown RBP1□□□□□ -2.25
PRKDC-210ENST00000541488 TCF23Q7RTU1 214 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 SCXQ7RTU7 201 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 ZBTB8OSQ8IWT0 167 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 OR4P4Q8NGL7 312 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 OR9I1Q8NGQ6 314 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 OR5K1Q8NHB7 308 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 MFSD8Q8NHS3 518 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 CCDC127Q96BQ5 260 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 UBQLN4Q9NRR5 601 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 PSORS1C2Q9UIG4 136 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 ENPP5Q9UJA9 477 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 SCML1Q9UN30 329 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 POFUT2Q9Y2G5 429 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 FIS1Q9Y3D6 152 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 HSPE1-MOB4S4R3N1 261 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 RYR1P21817 5038 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 PARP14Q460N5 1801 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 COL6A6A6NMZ7 2263 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 ICE1Q9Y2F5 2266 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 ZANQ9Y493 2812 aa1□□□□□ -2.25
PRKDC-210ENST00000541488 ZNF469Q96JG9 3925 aaPredicted RBP1□□□□□ -2.25
PRKDC-210ENST00000541488 TRPM6Q9BX84 2022 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 CACNA1EQ15878 2313 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 RYR2Q92736 4967 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 TRGV4A0A0C4DH28 118 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 C17orf98A8MV24 154 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 LY6LH3BQJ8 138 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 SULT1C2O00338 296 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 GPR171O14626 319 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 TOR1AO14656 332 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 RAB36O95755 333 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 LIMS3P0CW19 117 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 LIMS4P0CW20 117 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 PSG4Q00888 419 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 TMEM176BQ3YBM2 270 aaPredicted RBP0.99□□□□□ -2.25
PRKDC-210ENST00000541488 HENMT1Q5T8I9 393 aaKnown RBP0.99□□□□□ -2.25
PRKDC-210ENST00000541488 VN1R4Q7Z5H5 301 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 MSRB3Q8IXL7 192 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 ZNF567Q8N184 647 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 ZFAND2AQ8N6M9 145 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 DNAAF3Q8N9W5 541 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 OR5D18Q8NGL1 313 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 CCDC12Q8WUD4 166 aaPredicted RBP0.99□□□□□ -2.25
PRKDC-210ENST00000541488 EBNA1BP2Q99848 306 aaKnown RBP0.99□□□□□ -2.25
PRKDC-210ENST00000541488 POTEKPQ9BYX7 375 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 FBXL15Q9H469 300 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 TMEM216Q9P0N5 145 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 FBXL3Q9UKT7 428 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 WASHC3Q9Y3C0 194 aa0.99□□□□□ -2.25
PRKDC-210ENST00000541488 ATG2BQ96BY7 2078 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms