RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 TCTEX1D1Q8N7M0 179 aa13.15□□□□□ -0.3
CD9-209ENST00000540891 ZNF491Q8N8L2 437 aa13.15□□□□□ -0.3
CD9-209ENST00000540891 TEX45Q8NA69 505 aa13.15□□□□□ -0.3
CD9-209ENST00000540891 GRPEL2Q8TAA5 225 aa13.15□□□□□ -0.3
CD9-209ENST00000540891 CASTOR1Q8WTX7 329 aa13.15□□□□□ -0.3
CD9-209ENST00000540891 FXYD6Q9H0Q3 95 aa13.15□□□□□ -0.3
CD9-209ENST00000540891 CCDC59Q9P031 241 aaKnown RBP13.15□□□□□ -0.3
CD9-209ENST00000540891 FOXA2Q9Y261 457 aaPredicted RBP13.15□□□□□ -0.3
CD9-209ENST00000540891 NOTCH1P46531 2555 aa13.15□□□□□ -0.3
CD9-209ENST00000540891 WIPF1O43516 503 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 IGLL1P15814 213 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 RCVRNP35243 200 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 GNB1P62873 340 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 TMEM267Q0VDI3 215 aaPredicted RBP13.14□□□□□ -0.31
CD9-209ENST00000540891 PRSS8Q16651 343 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 ACTBL2Q562R1 376 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 RNASE12Q5GAN4 147 aaKnown RBP13.14□□□□□ -0.31
CD9-209ENST00000540891 ASPHD1Q5U4P2 390 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 VKORC1L1Q8N0U8 176 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 OR52I2Q8NH67 350 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 OR4S2Q8NH73 311 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 C4orf3Q8WVX3 66 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 UBE2E2Q96LR5 201 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 DCUN1D5Q9BTE7 237 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 GNB4Q9HAV0 340 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 SCOCQ9UIL1 159 aa13.14□□□□□ -0.31
CD9-209ENST00000540891 CCL24O00175 119 aa13.13□□□□□ -0.31
CD9-209ENST00000540891 RAMP3O60896 148 aa13.13□□□□□ -0.31
CD9-209ENST00000540891 TPPPO94811 219 aa13.13□□□□□ -0.31
CD9-209ENST00000540891 HERV-K104P61576 105 aa13.13□□□□□ -0.31
CD9-209ENST00000540891 TMEM65Q6PI78 240 aa13.13□□□□□ -0.31
CD9-209ENST00000540891 SLIRPQ9GZT3 109 aaKnown RBP13.13□□□□□ -0.31
CD9-209ENST00000540891 KLK11Q9UBX7 282 aa13.13□□□□□ -0.31
CD9-209ENST00000540891 I3L521 148 aa13.12□□□□□ -0.31
CD9-209ENST00000540891 RGS5O15539 181 aa13.12□□□□□ -0.31
CD9-209ENST00000540891 CNIH1O95406 144 aa13.12□□□□□ -0.31
CD9-209ENST00000540891 PUSL1Q8N0Z8 303 aaKnown RBP13.12□□□□□ -0.31
CD9-209ENST00000540891 OR5M8Q8NGP6 311 aa13.12□□□□□ -0.31
CD9-209ENST00000540891 OR6F1Q8NGZ6 308 aa13.12□□□□□ -0.31
CD9-209ENST00000540891 ZNF430Q9H8G1 570 aaPredicted RBP13.12□□□□□ -0.31
CD9-209ENST00000540891 VSIG4Q9Y279 399 aa13.12□□□□□ -0.31
CD9-209ENST00000540891 NOTCH3Q9UM47 2321 aa13.11□□□□□ -0.31
CD9-209ENST00000540891 NOL3O60936 208 aaKnown RBP13.11□□□□□ -0.31
CD9-209ENST00000540891 KIR2DS2P43631 304 aa13.11□□□□□ -0.31
CD9-209ENST00000540891 FHL3Q13643 280 aa13.11□□□□□ -0.31
CD9-209ENST00000540891 TNXAQ16473 311 aa13.11□□□□□ -0.31
CD9-209ENST00000540891 VAX1Q5SQQ9 334 aa13.11□□□□□ -0.31
CD9-209ENST00000540891 SPAG16Q8N0X2 631 aa13.11□□□□□ -0.31
CD9-209ENST00000540891 OR5B12Q96R08 314 aa13.11□□□□□ -0.31
CD9-209ENST00000540891 RBM38Q9H0Z9 239 aaKnown RBP13.11□□□□□ -0.31
CD9-209ENST00000540891 MTFP1Q9UDX5 166 aa13.11□□□□□ -0.31
CD9-209ENST00000540891 M0QYG6 137 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 RBFOX2O43251 390 aaKnown RBP eCLIP13.1□□□□□ -0.31
CD9-209ENST00000540891 PGLYRP1O75594 196 aaPredicted RBP13.1□□□□□ -0.31
CD9-209ENST00000540891 RUNX1Q01196 453 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 CATR1Q13166 79 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 C10orf55Q5SWW7 151 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 PYHIN1Q6K0P9 492 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 OR5T1Q8NG75 326 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 OR51H1Q8NH63 302 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 TMEM167AQ8TBQ9 72 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 SRSF12Q8WXF0 261 aaKnown RBP13.1□□□□□ -0.31
CD9-209ENST00000540891 RCC1LQ96I51 464 aaKnown RBP13.1□□□□□ -0.31
CD9-209ENST00000540891 MS4A10Q96PG2 267 aa13.1□□□□□ -0.31
CD9-209ENST00000540891 NXF2Q9GZY0 626 aaKnown RBP13.1□□□□□ -0.31
CD9-209ENST00000540891 ALX4Q9H161 411 aaPredicted RBP13.1□□□□□ -0.31
CD9-209ENST00000540891 MSGN1A6NI15 193 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 KBTBD11O94819 623 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 OR2A4O95047 310 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 APELAP0DMC3 54 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 TSPAN5P62079 268 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 DGCR2P98153 550 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 AADACL3Q5VUY0 350 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 FOXB2Q5VYV0 432 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 MMD2Q8IY49 270 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 POC5Q8NA72 575 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 OR11H1Q8NG94 326 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 C15orf40Q8WUR7 153 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 BORCS5Q969J3 196 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 RHOVQ96L33 236 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 TMEM68Q96MH6 324 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 OR2A7Q96R45 310 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 TINAGL1Q9GZM7 467 aaPredicted RBP13.09□□□□□ -0.31
CD9-209ENST00000540891 TNCP24821 2201 aa13.09□□□□□ -0.31
CD9-209ENST00000540891 GABARAPH6UMI1 98 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 GPR31O00270 319 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 HRASP01112 189 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 PRB2P02812 416 aaPredicted RBP13.08□□□□□ -0.32
CD9-209ENST00000540891 CD3DP04234 171 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 RLN1P04808 185 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 TPPP2P59282 170 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 PDLIM3Q53GG5 364 aaPredicted RBP13.08□□□□□ -0.32
CD9-209ENST00000540891 SSX9Q7RTT3 188 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 LHFPL1Q86WI0 220 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 OR1N2Q8NGR9 330 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 VSTM2AQ8TAG5 236 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 FCAMRQ8WWV6 532 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 DIRAS2Q96HU8 199 aa13.08□□□□□ -0.32
CD9-209ENST00000540891 C6orf62Q9GZU0 229 aaPredicted RBP13.08□□□□□ -0.32
CD9-209ENST00000540891 SLA2Q9H6Q3 261 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms