RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 ISOC1Q96CN7 298 aa6.41□□□□□ -1.38
USP28-203ENST00000537490 ATG5Q9H1Y0 275 aa6.41□□□□□ -1.38
USP28-203ENST00000537490 TUBA4BQ9H853 241 aa6.41□□□□□ -1.38
USP28-203ENST00000537490 TNCP24821 2201 aa6.41□□□□□ -1.38
USP28-203ENST00000537490 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.4□□□□□ -1.38
USP28-203ENST00000537490 TRDV1A0A1B0GX56 115 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 METTL21EPA6NDL7 271 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 HMX3A6NHT5 357 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 ZNF785A8K8V0 405 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 MPPED1O15442 326 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 OR2A4O95047 310 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 IGLV2-14P01704 120 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 EDN2P20800 178 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 NFYAP23511 347 aaPredicted RBP6.4□□□□□ -1.38
USP28-203ENST00000537490 DTYMKP23919 212 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 MYL9P24844 172 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 EXOSC2Q13868 293 aaKnown RBP6.4□□□□□ -1.38
USP28-203ENST00000537490 CDK10Q15131 360 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 CD300EQ496F6 205 aaPredicted RBP6.4□□□□□ -1.38
USP28-203ENST00000537490 OR2B11Q5JQS5 317 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 C22orf42Q6IC83 251 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 LINC00322Q6ZN03 302 aaPredicted RBP6.4□□□□□ -1.38
USP28-203ENST00000537490 GTSCR1Q86UQ5 136 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 TTC9CQ8N5M4 171 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 ZNF645Q8N7E2 425 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 CNBD2Q96M20 576 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 DCUN1D5Q9BTE7 237 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 CENPOQ9BU64 300 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 ST6GALNAC5Q9BVH7 336 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 RETNQ9HD89 108 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 NDUFB11Q9NX14 153 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 PEMTQ9UBM1 199 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 RBMX2Q9Y388 322 aaKnown RBP6.4□□□□□ -1.38
USP28-203ENST00000537490 DMRT1Q9Y5R6 373 aa6.4□□□□□ -1.38
USP28-203ENST00000537490 IGKV1D-13A0A0B4J2D9 117 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 FAM223BA6NKX1 122 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 PPP5D1E7EU14 171 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 E7EUB6 86 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 AIREO43918 545 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 TUSC2O75896 110 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 OR2J3O76001 311 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 ACTL6BO94805 426 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 HLA-AP01891 365 aaKnown RBP6.39□□□□□ -1.39
USP28-203ENST00000537490 HLA-DQB1P01920 261 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 IFNA6P05013 189 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 IL6RP08887 468 aaPredicted RBP6.39□□□□□ -1.39
USP28-203ENST00000537490 CD7P09564 240 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 IGKV1-13P0DP09 117 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 BRWD1-AS2P59051 145 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 CD81P60033 236 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 DEFB114Q30KQ6 69 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 HACD4Q5VWC8 232 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 C19orf35Q6ZS72 473 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 FAM223AQ8IWN6 122 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 MMD2Q8IY49 270 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 VKORC1L1Q8N0U8 176 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 OR2K2Q8NGT1 345 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 NUDCD2Q8WVJ2 157 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 SPIN2AQ99865 258 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 SPIN2BQ9BPZ2 258 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 NEURL2Q9BR09 285 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 OR51E2Q9H255 320 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 HIPK2Q9H2X6 1198 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 PLEKHA3Q9HB20 300 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 OR2W1Q9Y3N9 320 aa6.39□□□□□ -1.39
USP28-203ENST00000537490 A0A1B0GW64 132 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 RBMY1BA6NDE4 496 aaKnown RBP6.38□□□□□ -1.39
USP28-203ENST00000537490 RBMY1EA6NEQ0 496 aaKnown RBP6.38□□□□□ -1.39
USP28-203ENST00000537490 TMEM235A6NFC5 223 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 NOTOA8MTQ0 251 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 TEX22C9J3V5 150 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 SSX5O60225 188 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 CREBL2O60519 120 aaPredicted RBP6.38□□□□□ -1.39
USP28-203ENST00000537490 NDUFB8O95169 186 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 OR2C1O95371 312 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 IGHV3-23P01764 117 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 CTXN2P0C2S0 81 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 RBMY1DP0C7P1 496 aaKnown RBP6.38□□□□□ -1.39
USP28-203ENST00000537490 KIR2DS2P43631 304 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 EIF4EBP1Q13541 118 aaPredicted RBP6.38□□□□□ -1.39
USP28-203ENST00000537490 ARL6IP1Q15041 203 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 C15orf32Q32M92 178 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 CNIH2Q6PI25 160 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 IZUMO2Q6UXV1 221 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 KCTD9Q7L273 389 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 PUSL1Q8N0Z8 303 aaKnown RBP6.38□□□□□ -1.39
USP28-203ENST00000537490 DEFB125Q8N687 156 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 NECAP1Q8NC96 275 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 FANCD2OSQ96PS1 177 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 GPHA2Q96T91 129 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 FAM110AQ9BQ89 295 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 WFDC10AQ9H1F0 79 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 DCSTAMPQ9H295 470 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 FBXL7Q9UJT9 491 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 PRELID3BQ9Y3B1 194 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 SELENOKQ9Y6D0 94 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 CEPT1Q9Y6K0 416 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 S4R3C0 116 aa6.38□□□□□ -1.39
USP28-203ENST00000537490 SACSQ9NZJ4 4579 aa6.37□□□□□ -1.39
USP28-203ENST00000537490 ERICH4A6NGS2 130 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms