RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 UBE2E2Q96LR5 201 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 FAM103A1Q9BTL3 118 aaKnown RBP10.11□□□□□ -0.79
VPS28-216ENST00000533806 FXYD6Q9H0Q3 95 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 GABARAPH6UMI1 98 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 NOL3O60936 208 aaKnown RBP10.1□□□□□ -0.79
VPS28-216ENST00000533806 PGLYRP1O75594 196 aaPredicted RBP10.1□□□□□ -0.79
VPS28-216ENST00000533806 CD74P04233 296 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 CD3DP04234 171 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 IL6RP08887 468 aaPredicted RBP10.1□□□□□ -0.79
VPS28-216ENST00000533806 PF4V1P10720 104 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 TBPP20226 339 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 TNFSF8P32971 234 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 KIR2DS2P43631 304 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 RAB9AP51151 201 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 UCP3P55916 312 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 HERV-K104P61576 105 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 DGCR2P98153 550 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 TMEM267Q0VDI3 215 aaPredicted RBP10.1□□□□□ -0.79
VPS28-216ENST00000533806 VMA21Q3ZAQ7 101 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 KHDC1LQ5JSQ8 128 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 KPRPQ5T749 579 aaPredicted RBP10.1□□□□□ -0.79
VPS28-216ENST00000533806 IDO2Q6ZQW0 420 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 C8orf86Q6ZUL3 223 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 LHFPL1Q86WI0 220 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 TMEM17Q86X19 198 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 MRPL41Q8IXM3 137 aaKnown RBP10.1□□□□□ -0.79
VPS28-216ENST00000533806 LINC00482Q8N8I6 264 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 FCAMRQ8WWV6 532 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 RAX2Q96IS3 184 aa10.1□□□□□ -0.79
VPS28-216ENST00000533806 FOXA2Q9Y261 457 aaPredicted RBP10.1□□□□□ -0.79
VPS28-216ENST00000533806 I3L521 148 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 M0QYG6 137 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 BRI3O95415 125 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 MYCNOSP40205 109 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 MRPS10P82664 201 aaKnown RBP10.09□□□□□ -0.79
VPS28-216ENST00000533806 RUNX1Q01196 453 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 SSBP1Q04837 148 aaKnown RBP10.09□□□□□ -0.79
VPS28-216ENST00000533806 POU2AF1Q16633 256 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 ECSCRQ19T08 205 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 ACTBL2Q562R1 376 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 PYHIN1Q6K0P9 492 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 VKORC1L1Q8N0U8 176 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 SPAG16Q8N0X2 631 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 TMEM229BQ8NBD8 167 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 KLHL30-AS1Q8NEE0 82 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 OR5M8Q8NGP6 311 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 MCFD2Q8NI22 146 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 TMEM167AQ8TBQ9 72 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 SMIM4Q8WVI0 70 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 C4orf3Q8WVX3 66 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 BORCS5Q969J3 196 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 DIRAS2Q96HU8 199 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 RHOVQ96L33 236 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 RSRP1Q9BUV0 290 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 TINAGL1Q9GZM7 467 aaPredicted RBP10.09□□□□□ -0.79
VPS28-216ENST00000533806 C6orf62Q9GZU0 229 aaPredicted RBP10.09□□□□□ -0.79
VPS28-216ENST00000533806 ZNF430Q9H8G1 570 aaPredicted RBP10.09□□□□□ -0.79
VPS28-216ENST00000533806 RABL2AQ9UBK7 228 aaPredicted RBP10.09□□□□□ -0.79
VPS28-216ENST00000533806 RSL24D1Q9UHA3 163 aaKnown RBP10.09□□□□□ -0.79
VPS28-216ENST00000533806 RABL2BQ9UNT1 228 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 A3GALT2U3KPV4 340 aa10.09□□□□□ -0.79
VPS28-216ENST00000533806 A0A1W2PN81 502 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 G3V4G9 280 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 GSTZ1O43708 216 aaPredicted RBP10.08□□□□□ -0.8
VPS28-216ENST00000533806 CHRNA7P36544 502 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 TSPAN5P62079 268 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 FHL3Q13643 280 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 BEAN1Q3B7T3 259 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 RNASE12Q5GAN4 147 aaKnown RBP10.08□□□□□ -0.8
VPS28-216ENST00000533806 TMEM65Q6PI78 240 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 UNQ5815/PRO19632Q6UWF5 114 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 ARRDC1Q8N5I2 433 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 OR4D10Q8NGI6 311 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 GRPEL2Q8TAA5 225 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 TMEM68Q96MH6 324 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 DCUN1D5Q9BTE7 237 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 GNB4Q9HAV0 340 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 PLEKHA2Q9HB19 425 aa10.08□□□□□ -0.8
VPS28-216ENST00000533806 PRKDCP78527 4128 aaKnown RBP10.07□□□□□ -0.8
VPS28-216ENST00000533806 A0A1B0GW64 132 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 MSGN1A6NI15 193 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 NUDT19A8MXV4 375 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 CCL24O00175 119 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 GPR31O00270 319 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 KBTBD11O94819 623 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 OR2A4O95047 310 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 CNIH1O95406 144 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 HPRT1P00492 218 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 HRASP01112 189 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 PF4P02776 101 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 ZNF735P0CB33 412 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 TAS2R31P59538 309 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 GNB1P62873 340 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 CATR1Q13166 79 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 ZNF585BQ52M93 769 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 OXLD1Q5BKU9 147 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 RNASE10Q5GAN6 216 aaKnown RBP10.07□□□□□ -0.8
VPS28-216ENST00000533806 LPCAT3Q6P1A2 487 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 MMD2Q8IY49 270 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 CADM3Q8N126 398 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms