RNA–Protein interactions for RNA: ENST00000533145.5

HIF3A-215, Transcript of hypoxia inducible factor 3 subunit alpha, human

TSL 4

Gene HIF3A, Length 573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HIF3A-215	ENST00000533145	RPS16	P62249	146 aa	Known RBP	11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145	LRRC75B	Q2VPJ9	315 aa		11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145	DEFB112	Q30KQ8	113 aa		11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145	CLEC9A	Q6UXN8	241 aa		11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145		Q8N6K4	173 aa		11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145	UXS1	Q8NBZ7	420 aa		11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145	R3HDM4	Q96D70	268 aa		11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145	EAF1	Q96JC9	268 aa	Predicted RBP	11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145	MMP24	Q9Y5R2	645 aa		11.3	□□□□□ -0.6
HIF3A-215	ENST00000533145	MARCH11	A6NNE9	402 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	KRAS	P01116	189 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	IFNA21	P01568	189 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	IGKV1D-33	P01593	117 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	IGKV1-33	P01594	117 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	IGKV1-5	P01602	117 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	IGLV2-23	P01705	113 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	SNRNP70	P08621	437 aa	Known RBP	11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	HOXB5	P09067	269 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	BCAP31	P51572	246 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	FCN2	Q15485	313 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	C2orf68	Q2NKX9	166 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	NMS	Q5H8A3	153 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	GGNBP1	Q5YKI7	109 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145		Q6YL49	198 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	PUSL1	Q8N0Z8	303 aa	Known RBP	11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	NPB	Q8NG41	125 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	OR8H1	Q8NGG4	311 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	RRNAD1	Q96FB5	475 aa	Known RBP	11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	RITA1	Q96K30	269 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	RHOV	Q96L33	236 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	HARBI1	Q96MB7	349 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	TSNAX	Q99598	290 aa	Known RBP	11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	SSX3	Q99909	188 aa		11.29	□□□□□ -0.6
HIF3A-215	ENST00000533145	ADAP1	O75689	374 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	NDUFA3	O95167	84 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	SPDEF	O95238	335 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	CRYGB	P07316	175 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	FGF2	P09038	288 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	G6PC	P35575	357 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	SRP14	P37108	136 aa	Known RBP	11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	UBE2K	P61086	200 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	ERVK-16	P61578	105 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	SRSF4	Q08170	494 aa	Known RBP	11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	TEX45	Q8NA69	505 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	OR11H7	Q8NGC8	314 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	OR5M8	Q8NGP6	311 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	VSTM2A	Q8TAG5	236 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	GPR146	Q96CH1	333 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	ZNF48	Q96MX3	618 aa	Predicted RBP	11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	PLSCR3	Q9NRY6	295 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	COA4	Q9NYJ1	87 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	BET1L	Q9NYM9	111 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	CDC42EP3	Q9UKI2	254 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145	NAV3	Q8IVL0	2385 aa		11.28	□□□□□ -0.6
HIF3A-215	ENST00000533145		A0A0G2JRQ6	117 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145		A0A1B0GU03	582 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	OR2A4	O95047	310 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	IER3	P46695	156 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	AKR1C2	P52895	323 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	SCGB2A2	Q13296	93 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	PSG5	Q15238	335 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	VMA21	Q3ZAQ7	101 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	GSG1L	Q6UXU4	331 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	IL17REL	Q6ZVW7	336 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	H2BFWT	Q7Z2G1	175 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	DMBX1	Q8NFW5	382 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	OR4A5	Q8NH83	315 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	ASB13	Q8WXK3	278 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	OR2A7	Q96R45	310 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	SPIN2A	Q99865	258 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	SPIN2B	Q9BPZ2	258 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	MGAT4C	Q9UBM8	478 aa		11.27	□□□□□ -0.61
HIF3A-215	ENST00000533145	TLN2	Q9Y4G6	2542 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	hCG_2014768	A0A024R1R8	64 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145		A6NDX4	124 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	GOSR2	O14653	212 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	PITX3	O75364	302 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	SAA1	P0DJI8	122 aa	Predicted RBP	11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	TMEM11	P17152	192 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	CXCL3	P19876	107 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	CD24	P25063	80 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	F2RL1	P55085	397 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	IL15RA	Q13261	267 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	HES1	Q14469	280 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	AARD	Q4LEZ3	155 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	OR4A47	Q6IF82	309 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145		Q6ZRM9	215 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	OR5R1	Q8NH85	324 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	TMEM167A	Q8TBQ9	72 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	C22orf15	Q8WYQ4	148 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	RBMXL1	Q96E39	390 aa	Known RBP	11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	OR10C1	Q96KK4	312 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	C2orf50	Q96LR7	162 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	GSX1	Q9H4S2	264 aa	Predicted RBP	11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	TMEM140	Q9NV12	185 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	C1RL	Q9NZP8	487 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	PITPNC1	Q9UKF7	332 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	TCF19	Q9Y242	345 aa		11.26	□□□□□ -0.61
HIF3A-215	ENST00000533145	TET2	Q6N021	2002 aa	Predicted RBP	11.25	□□□□□ -0.61
HIF3A-215	ENST00000533145	MTOR	P42345	2549 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms