RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 IL5P05113 134 aa12.21□□□□□ -0.45
LSM1-203ENST00000520755 MC5RP33032 325 aa12.21□□□□□ -0.45
LSM1-203ENST00000520755 TAGLNQ01995 201 aaKnown RBP12.21□□□□□ -0.45
LSM1-203ENST00000520755 TCTEX1D1Q8N7M0 179 aa12.21□□□□□ -0.45
LSM1-203ENST00000520755 MINDY2Q8NBR6 621 aa12.21□□□□□ -0.45
LSM1-203ENST00000520755 OR2T10Q8NGZ9 312 aa12.21□□□□□ -0.45
LSM1-203ENST00000520755 C1RLQ9NZP8 487 aa12.21□□□□□ -0.45
LSM1-203ENST00000520755 SRRM4A7MD48 611 aaKnown RBP12.2□□□□□ -0.46
LSM1-203ENST00000520755 OR2F2O95006 317 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 MOSP00540 346 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 RRASP10301 218 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 LPAR6P43657 344 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 RPL15P61313 204 aaKnown RBP12.2□□□□□ -0.46
LSM1-203ENST00000520755 C4orf46Q504U0 113 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 CASTOR1Q8WTX7 329 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 HARBI1Q96MB7 349 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 RBM14Q96PK6 669 aaKnown RBP12.2□□□□□ -0.46
LSM1-203ENST00000520755 PLEKHA2Q9HB19 425 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 COMMD9Q9P000 198 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 TNCP24821 2201 aa12.2□□□□□ -0.46
LSM1-203ENST00000520755 FBN1P35555 2871 aaKnown RBP12.19□□□□□ -0.46
LSM1-203ENST00000520755 C7orf66A4D0T2 115 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 B3GALNT1O75752 331 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 CDS2O95674 445 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 HPRT1P00492 218 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 HKR1P10072 659 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 F2RL1P55085 397 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 RELBQ01201 579 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 TATDN3Q17R31 274 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 C16orf82Q7Z2V1 217 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 VKORC1L1Q8N0U8 176 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 OR4C13Q8NGP0 309 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 OSR1Q8TAX0 266 aaPredicted RBP12.19□□□□□ -0.46
LSM1-203ENST00000520755 CD300LFQ8TDQ1 290 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 ZNF431Q8TF32 576 aaPredicted RBP12.19□□□□□ -0.46
LSM1-203ENST00000520755 FLYWCH2Q96CP2 140 aaKnown RBP12.19□□□□□ -0.46
LSM1-203ENST00000520755 TMEM56Q96MV1 263 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 NPFFR1Q9GZQ6 430 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 TPSG1Q9NRR2 321 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 PLSCR3Q9NRY6 295 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 MOB4Q9Y3A3 225 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 TMEM56-RWDD3S4R434 201 aa12.19□□□□□ -0.46
LSM1-203ENST00000520755 A0A0G2JRQ6 117 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 NCBP2LA6PVI3 153 aaKnown RBP12.18□□□□□ -0.46
LSM1-203ENST00000520755 SHOXO15266 292 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 PRAF2O60831 178 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 NDUFA3O95167 84 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 DUS4LO95620 317 aaKnown RBP12.18□□□□□ -0.46
LSM1-203ENST00000520755 IGKV1-5P01602 117 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 SERPINE2P07093 398 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 P0C879 139 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 SAA1P0DJI8 122 aaPredicted RBP12.18□□□□□ -0.46
LSM1-203ENST00000520755 POU2AF1Q16633 256 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 LIN54Q6MZP7 749 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 Q6ZSV7 163 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 SELENOHQ8IZQ5 122 aaKnown RBP12.18□□□□□ -0.46
LSM1-203ENST00000520755 LRTM2Q8N967 370 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 MITD1Q8WV92 249 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 R3HDM4Q96D70 268 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 SEC22AQ96IW7 307 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 MDFIQ99750 246 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 KCNIP3Q9Y2W7 256 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 ALG5Q9Y673 324 aa12.18□□□□□ -0.46
LSM1-203ENST00000520755 SH2D7A6NKC9 451 aaPredicted RBP12.17□□□□□ -0.46
LSM1-203ENST00000520755 DHFRP00374 187 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 CRYGBP07316 175 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 ANXA3P12429 323 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 RPA2P15927 270 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 G6PCP35575 357 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 RPS16P62249 146 aaKnown RBP12.17□□□□□ -0.46
LSM1-203ENST00000520755 BLCAPP62952 87 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 PSG5Q15238 335 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 MMDQ15546 238 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 MRGPRG-AS1Q2M3A8 158 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 KRTAP21-3Q3LHN1 58 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 TMEM268Q5VZI3 342 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 SLC35G3Q8N808 338 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 NPBQ8NG41 125 aa12.17□□□□□ -0.46
LSM1-203ENST00000520755 RBPMSQ93062 196 aaKnown RBP12.17□□□□□ -0.46
LSM1-203ENST00000520755 ATRQ13535 2644 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 TMEM89A2RUT3 159 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 DBX1A6NMT0 343 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 MARCH11A6NNE9 402 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 M0QZK8 103 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 NBR2O15453 112 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 SLC25A17O43808 307 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 NDUFA7O95182 113 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 AMY1AP04745 511 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 NQO2P16083 231 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 MDKP21741 143 aaPredicted RBP12.16□□□□□ -0.46
LSM1-203ENST00000520755 CBX3Q13185 183 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 IZUMO4Q1ZYL8 232 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 C9orf152Q5JTZ5 239 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 OR4A47Q6IF82 309 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 Q6ZNX1 250 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 SSX9Q7RTT3 188 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 LYZL2Q7Z4W2 148 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 PUSL1Q8N0Z8 303 aaKnown RBP12.16□□□□□ -0.46
LSM1-203ENST00000520755 LGI3Q8N145 548 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 FAM71E2Q8N5Q1 922 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms