RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	PLCXD1	Q9NUJ7	323 aa		11.78	□□□□□ -0.52
LMNA-223	ENST00000515459	ZNF257	Q9Y2Q1	563 aa		11.78	□□□□□ -0.52
LMNA-223	ENST00000515459	SELENOK	Q9Y6D0	94 aa		11.78	□□□□□ -0.52
LMNA-223	ENST00000515459	LINC00473	A8K010	186 aa		11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	TNFRSF9	Q07011	255 aa		11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	LYG2	Q86SG7	212 aa		11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	WFDC3	Q8IUB2	231 aa		11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	C8orf59	Q8N0T1	100 aa	Predicted RBP	11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	RPP25L	Q8N5L8	163 aa	Known RBP	11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	BPIFB6	Q8NFQ5	453 aa		11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	GFI1	Q99684	422 aa		11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	MND1	Q9BWT6	205 aa		11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	MLX	Q9UH92	298 aa		11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	KLK5	Q9Y337	293 aa	Predicted RBP	11.77	□□□□□ -0.53
LMNA-223	ENST00000515459	ZNF320	A2RRD8	509 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	TMEM213	A2RRL7	107 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459		A8MWP6	167 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	SCAF4	O95104	1147 aa	Known RBP	11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	CDK1	P06493	297 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	FCGR3A	P08637	254 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	SAA1	P0DJI8	122 aa	Predicted RBP	11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	BMI1	P35226	326 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	ARL3	P36405	182 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	EWSR1	Q01844	656 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	RAB11B	Q15907	218 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	FAM106A	Q4KMX7	169 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	C10orf55	Q5SWW7	151 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	UXS1	Q8NBZ7	420 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	GINS4	Q9BRT9	223 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	FKBP14	Q9NWM8	211 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	FBXL7	Q9UJT9	491 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	TP53TG1	Q9Y2A0	90 aa		11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	AK6	Q9Y3D8	172 aa	Known RBP	11.76	□□□□□ -0.53
LMNA-223	ENST00000515459	HMX3	A6NHT5	357 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	DENR	O43583	198 aa	Known RBP	11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	SPRY2	O43597	315 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	GNAO1	P09471	354 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	C2orf76	Q3KRA6	126 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	TM4SF20	Q53R12	229 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	OR4A47	Q6IF82	309 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	CLEC19A	Q6UXS0	136 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459		Q6ZWC4	215 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	PACRGL	Q8N7B6	248 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	FAM3D	Q96BQ1	224 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	RAB3C	Q96E17	227 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	CCDC140	Q96MF4	163 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	DCUN1D5	Q9BTE7	237 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	C8orf4	Q9NR00	106 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	KCNK7	Q9Y2U2	307 aa		11.75	□□□□□ -0.53
LMNA-223	ENST00000515459	DPPA5	A6NC42	116 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	NPIPB5	A8MRT5	1133 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	IGHV3-23	P01764	117 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	RANBP1	P43487	201 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	APOC4	P55056	127 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	CLDN12	P56749	244 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	SPHAR	Q15513	63 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	FBLIM1	Q8WUP2	373 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	MAFIP	Q8WZ33	124 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	TMEM203	Q969S6	136 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	CENPO	Q9BU64	300 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	KMT2A	Q03164	3969 aa		11.74	□□□□□ -0.53
LMNA-223	ENST00000515459	TRAV25	A0A0B4J276	109 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	TEX22	C9J3V5	150 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	FCGR3B	O75015	233 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	ATF4	P18848	351 aa	Predicted RBP	11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	MED22	Q15528	200 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	LIPK	Q5VXJ0	399 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	BTNL8	Q6UX41	500 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	RBPMS2	Q6ZRY4	209 aa	Known RBP	11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	C19orf35	Q6ZS72	473 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	H1FOO	Q8IZA3	346 aa	Predicted RBP	11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	OR1L6	Q8NGR2	347 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	OR51E2	Q9H255	320 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	LSM2	Q9Y333	95 aa	Known RBP	11.73	□□□□□ -0.53
LMNA-223	ENST00000515459		S4R3C0	116 aa		11.73	□□□□□ -0.53
LMNA-223	ENST00000515459	ERICH4	A6NGS2	130 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	DEDD	O75618	318 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	ARL6IP5	O75915	188 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	DHFR	P00374	187 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	DEFB135	Q30KP9	77 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	TMEM91	Q6ZNR0	172 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	KCTD9	Q7L273	389 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	UFD1	Q92890	307 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	MARC2	Q969Z3	335 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	EEF1AKMT3	Q96AZ1	226 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	FANCD2OS	Q96PS1	177 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	FYTTD1	Q96QD9	318 aa	Known RBP	11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	SLC2A9	Q9NRM0	540 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	RAB22A	Q9UL26	194 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	MRPS7	Q9Y2R9	242 aa	Known RBP	11.72	□□□□□ -0.53
LMNA-223	ENST00000515459	PRELID3B	Q9Y3B1	194 aa		11.72	□□□□□ -0.53
LMNA-223	ENST00000515459		A0A075B6Q4	140 aa		11.71	□□□□□ -0.53
LMNA-223	ENST00000515459	TMEM272	A0A1B0GTI8	110 aa		11.71	□□□□□ -0.53
LMNA-223	ENST00000515459		E7EUB6	86 aa		11.71	□□□□□ -0.53
LMNA-223	ENST00000515459	UBE2C	O00762	179 aa		11.71	□□□□□ -0.53
LMNA-223	ENST00000515459	KBTBD11	O94819	623 aa		11.71	□□□□□ -0.53
LMNA-223	ENST00000515459	IL6R	P08887	468 aa	Predicted RBP	11.71	□□□□□ -0.53
LMNA-223	ENST00000515459	GNB3	P16520	340 aa		11.71	□□□□□ -0.53
LMNA-223	ENST00000515459	GADD45A	P24522	165 aa		11.71	□□□□□ -0.53
LMNA-223	ENST00000515459	RPL27A	P46776	148 aa	Known RBP	11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms