RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 PLGLAQ15195 96 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 POU2AF1Q16633 256 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 VMA21Q3ZAQ7 101 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 ACTBL2Q562R1 376 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 KHDC1LQ5JSQ8 128 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 VAX1Q5SQQ9 334 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 FOXB2Q5VYV0 432 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 ZNF818PQ6ZRF7 136 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 KCTD9Q7L273 389 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 CLVS1Q8IUQ0 354 aaPredicted RBP7.52□□□□□ -1.21
RNF4-221ENST00000513643 TMEM167AQ8TBQ9 72 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 SECTM1Q8WVN6 248 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 DUX3Q96PT4 197 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 GPHA2Q96T91 129 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 SOSTQ9BQB4 213 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 SLIRPQ9GZT3 109 aaKnown RBP7.52□□□□□ -1.21
RNF4-221ENST00000513643 ZNF430Q9H8G1 570 aaPredicted RBP7.52□□□□□ -1.21
RNF4-221ENST00000513643 PRELID3BQ9Y3B1 194 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 CEPT1Q9Y6K0 416 aa7.52□□□□□ -1.21
RNF4-221ENST00000513643 A0A1B0GW64 132 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 RAMP3O60896 148 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 PGLYRP1O75594 196 aaPredicted RBP7.51□□□□□ -1.21
RNF4-221ENST00000513643 PMP2P02689 132 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 RCVRNP35243 200 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 HRH1P35367 487 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 KIR2DS2P43631 304 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 UCP3P55916 312 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 KRTAP10-11P60412 298 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 GNB1P62873 340 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 CBX3Q13185 183 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 ECSCRQ19T08 205 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 DEFB136Q30KP8 78 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 AADACL3Q5VUY0 350 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 TMEM65Q6PI78 240 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 UNQ5815/PRO19632Q6UWF5 114 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 OR4S2Q8NH73 311 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 SLC5A7Q9GZV3 580 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 NXF2Q9GZY0 626 aaKnown RBP7.51□□□□□ -1.21
RNF4-221ENST00000513643 SLA2Q9H6Q3 261 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 IFT46Q9NQC8 304 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 TAS2R8Q9NYW2 309 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 EHFQ9NZC4 300 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 CCDC59Q9P031 241 aaKnown RBP7.51□□□□□ -1.21
RNF4-221ENST00000513643 KLK11Q9UBX7 282 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 MTFP1Q9UDX5 166 aa7.51□□□□□ -1.21
RNF4-221ENST00000513643 MRPS7Q9Y2R9 242 aaKnown RBP7.51□□□□□ -1.21
RNF4-221ENST00000513643 COL7A1Q02388 2944 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 TRBV9A0A0B4J1U6 114 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 MSGN1A6NI15 193 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 NUDT19A8MXV4 375 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 TEX22C9J3V5 150 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 E7EUB6 86 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 H3BMQ9 156 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 RBMXL2O75526 392 aaKnown RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 OR2A4O95047 310 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 CD74P04233 296 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 LGALS1P09382 135 aaKnown RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 HLA-DMAP28067 261 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 ZNF585BQ52M93 769 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 IDO2Q6ZQW0 420 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 REC114Q7Z4M0 266 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 LHFPL1Q86WI0 220 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 SNX29P2Q8IUI4 249 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 MMD2Q8IY49 270 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 VKORC1L1Q8N0U8 176 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 TTC9CQ8N5M4 171 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 POC5Q8NA72 575 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 ADAD2Q8NCV1 583 aaKnown RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 OR11H1Q8NG94 326 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 OR1N2Q8NGR9 330 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 OR5H2Q8NGV7 314 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 OR6F1Q8NGZ6 308 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 OR52I2Q8NH67 350 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 GRPEL2Q8TAA5 225 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 C15orf40Q8WUR7 153 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 TCTEX1D2Q8WW35 142 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 SRSF12Q8WXF0 261 aaKnown RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 ISOC1Q96CN7 298 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 OR2A7Q96R45 310 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 ZNF2Q9BSG1 426 aaPredicted RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 MCRIP2Q9BUT9 160 aaKnown RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 RSRP1Q9BUV0 290 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 TINAGL1Q9GZM7 467 aaPredicted RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 FXYD6Q9H0Q3 95 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 RBM38Q9H0Z9 239 aaKnown RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 PLEKHA2Q9HB19 425 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 FAM212BQ9NTI7 297 aaPredicted RBP7.5□□□□□ -1.21
RNF4-221ENST00000513643 BET1LQ9NYM9 111 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 EXTL2Q9UBQ6 330 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 SCOCQ9UIL1 159 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 A3GALT2U3KPV4 340 aa7.5□□□□□ -1.21
RNF4-221ENST00000513643 CGB1A6NKQ9 187 aa7.49□□□□□ -1.21
RNF4-221ENST00000513643 CTDSPLO15194 276 aa7.49□□□□□ -1.21
RNF4-221ENST00000513643 TNFSF12O43508 249 aa7.49□□□□□ -1.21
RNF4-221ENST00000513643 KBTBD11O94819 623 aa7.49□□□□□ -1.21
RNF4-221ENST00000513643 CNIH1O95406 144 aa7.49□□□□□ -1.21
RNF4-221ENST00000513643 HPRT1P00492 218 aa7.49□□□□□ -1.21
RNF4-221ENST00000513643 HRASP01112 189 aa7.49□□□□□ -1.21
RNF4-221ENST00000513643 CRYGCP07315 174 aa7.49□□□□□ -1.21
RNF4-221ENST00000513643 ZNF735P0CB33 412 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms