RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 FAM216AQ8WUB2 273 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 C19orf24Q9BVV8 132 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 ANAPC10Q9UM13 185 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 U3KQA8 63 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 COL4A3Q01955 1670 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 C17orf98A8MV24 154 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 TM4SF5O14894 197 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 CLEC3BP05452 202 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 ARL14EPLP0DKL9 152 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 RTN4RL2Q86UN3 420 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 DOLPP1Q86YN1 238 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 METTL1Q9UBP6 276 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 CORTO00230 105 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 ERVFRD-1P60508 538 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 PARLQ9H300 379 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 WFDC1Q9HC57 220 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 AURKAIP1Q9NWT8 199 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 TOX4O94842 621 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 WISP1O95388 367 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 PKIAP61925 76 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 ZDHHC16Q969W1 377 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 ARL2-SNX15V9GYD0 113 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 HIST1H1EP10412 219 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 ZNRF1Q8ND25 227 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 EIF3GO75821 320 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 VENTXO95231 258 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 P01737 135 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 TMEM11P17152 192 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 TCL1AP56279 114 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 RPL39P5Q59GN2 51 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 Q6ZS49 121 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 VKORC1L1Q8N0U8 176 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 LEAP2Q969E1 77 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 TMEM186Q96B77 213 aa9.08□□□□□ -0.96
LIMCH1-205ENST00000503057 SNURFLB1AK76 121 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 IER3P46695 156 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 RPL27AP46776 148 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 FA2HQ7L5A8 372 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 NAPSAO96009 420 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 HIST1H1BP16401 226 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 GUCD1Q96NT3 240 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 PCGF1Q9BSM1 259 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 C2orf16Q68DN1 1984 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 DOCK8Q8NF50 2099 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 DOCK9Q9BZ29 2069 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 CCL21O00585 134 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 GNG7O60262 68 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 CD5P06127 495 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 CDX1P47902 265 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 MMD2Q8IY49 270 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 ABHD12Q8N2K0 398 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 ZNF430Q9H8G1 570 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 HIGD1AQ9Y241 93 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 ZNF253O75346 499 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 BRS3P32247 399 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 WDR82Q6UXN9 313 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 OR4C13Q8NGP0 309 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 C1RLQ9NZP8 487 aa9.07□□□□□ -0.96
LIMCH1-205ENST00000503057 TRBV6-6A0A0A6YYG2 114 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 HYPMO75409 117 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 LINC00869P0C866 280 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 CCDC144NLQ6NUI1 221 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 OR5AU1Q8NGC0 362 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 AMTP48728 403 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 CAMPP49913 170 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 FOXG1P55316 489 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 OR1P1Q8NH06 330 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 COA4Q9NYJ1 87 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 KNTC1P50748 2209 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 A0A087X0M5 115 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 KBTBD11-OT1A0A1B0GTJ5 212 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 A0A1B0GX30 115 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 E9PLN8 166 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 MT-ND6P03923 174 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 CD40P25942 277 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 MDS2Q8NDY4 140 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 MRPL32Q9BYC8 188 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 APCSP02743 223 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 HTR1DP28221 377 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 HNRNPA3P51991 378 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 STPG3Q8N7X2 389 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 OR9G1Q8NH87 305 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 FAM57AQ8TBR7 257 aa9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 SNRNP200O75643 2136 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-205ENST00000503057 AGAP20933 346 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 MMDQ15546 238 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 MRPL54Q6P161 138 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 Q8WTZ3 238 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 ISLRO14498 428 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 YPEL1O60688 119 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 PAFAH1B2P68402 229 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 TFF3Q07654 80 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 ICAM4Q14773 271 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 YPEL2Q96QA6 119 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 HEATR5AQ86XA9 2040 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 MDKP21741 143 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 TMPRSS3P57727 454 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 A0A1B0GW64 132 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 C8orf88P0DMB2 117 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 LGALS7P47929 136 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms