RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 TAF15Q92804 592 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP4-214ENST00000491791 S1PR3Q99500 378 aa8.84□□□□□ -0.99
USP4-214ENST00000491791 TMEM147Q9BVK8 224 aa8.84□□□□□ -0.99
USP4-214ENST00000491791 TMEM231Q9H6L2 316 aa8.84□□□□□ -0.99
USP4-214ENST00000491791 TMA7Q9Y2S6 64 aaKnown RBP8.84□□□□□ -0.99
USP4-214ENST00000491791 PPIAL4AQ9Y536 164 aa8.84□□□□□ -0.99
USP4-214ENST00000491791 ARID1AO14497 2285 aa8.83□□□□□ -1
USP4-214ENST00000491791 SVILO95425 2214 aa8.83□□□□□ -1
USP4-214ENST00000491791 A0A087X0M5 115 aa8.83□□□□□ -1
USP4-214ENST00000491791 TRGV8A0A0C4DH27 118 aa8.83□□□□□ -1
USP4-214ENST00000491791 A0A1B0GX30 115 aa8.83□□□□□ -1
USP4-214ENST00000491791 RBFOX3A6NFN3 312 aa8.83□□□□□ -1
USP4-214ENST00000491791 FAM74A7A6NL05 159 aa8.83□□□□□ -1
USP4-214ENST00000491791 DEFB108AA8MXU0 73 aa8.83□□□□□ -1
USP4-214ENST00000491791 E7EQL1 145 aa8.83□□□□□ -1
USP4-214ENST00000491791 M0R1X1 148 aa8.83□□□□□ -1
USP4-214ENST00000491791 HSPB1P04792 205 aaKnown RBP8.83□□□□□ -1
USP4-214ENST00000491791 APOBEC3AP31941 199 aaPredicted RBP8.83□□□□□ -1
USP4-214ENST00000491791 VDAC2P45880 294 aaPredicted RBP8.83□□□□□ -1
USP4-214ENST00000491791 ATP5IP56385 69 aaPredicted RBP8.83□□□□□ -1
USP4-214ENST00000491791 RPP30P78346 268 aaKnown RBP8.83□□□□□ -1
USP4-214ENST00000491791 RELBQ01201 579 aa8.83□□□□□ -1
USP4-214ENST00000491791 TMEM249Q2WGJ8 235 aa8.83□□□□□ -1
USP4-214ENST00000491791 FAM74A3Q4VXF1 159 aa8.83□□□□□ -1
USP4-214ENST00000491791 KHDC3LQ587J8 217 aa8.83□□□□□ -1
USP4-214ENST00000491791 SPANXN5Q5MJ07 72 aa8.83□□□□□ -1
USP4-214ENST00000491791 FAM201AQ5SY85 155 aa8.83□□□□□ -1
USP4-214ENST00000491791 ALKBH2Q6NS38 261 aa8.83□□□□□ -1
USP4-214ENST00000491791 BTNL3Q6UXE8 466 aa8.83□□□□□ -1
USP4-214ENST00000491791 HEPN1Q6WQI6 88 aa8.83□□□□□ -1
USP4-214ENST00000491791 THNSL2Q86YJ6 484 aa8.83□□□□□ -1
USP4-214ENST00000491791 LINC00311Q8N616 119 aa8.83□□□□□ -1
USP4-214ENST00000491791 CCL13Q99616 98 aa8.83□□□□□ -1
USP4-214ENST00000491791 AIFM2Q9BRQ8 373 aa8.83□□□□□ -1
USP4-214ENST00000491791 GAL3ST2Q9H3Q3 398 aa8.83□□□□□ -1
USP4-214ENST00000491791 RPRMQ9NS64 109 aa8.83□□□□□ -1
USP4-214ENST00000491791 COQ3Q9NZJ6 369 aa8.83□□□□□ -1
USP4-214ENST00000491791 NDRG3Q9UGV2 375 aa8.83□□□□□ -1
USP4-214ENST00000491791 TANC2Q9HCD6 1990 aa8.82□□□□□ -1
USP4-214ENST00000491791 DYSFO75923 2080 aa8.82□□□□□ -1
USP4-214ENST00000491791 SAA2-SAA4A0A096LPE2 208 aa8.82□□□□□ -1
USP4-214ENST00000491791 FNDC10F2Z333 226 aa8.82□□□□□ -1
USP4-214ENST00000491791 H3BP45 60 aa8.82□□□□□ -1
USP4-214ENST00000491791 AGPAT2O15120 278 aa8.82□□□□□ -1
USP4-214ENST00000491791 SLC31A2O15432 143 aa8.82□□□□□ -1
USP4-214ENST00000491791 FCGR3BO75015 233 aa8.82□□□□□ -1
USP4-214ENST00000491791 MBP02144 154 aa8.82□□□□□ -1
USP4-214ENST00000491791 GYPAP02724 150 aa8.82□□□□□ -1
USP4-214ENST00000491791 OR9G9P0C7N8 305 aa8.82□□□□□ -1
USP4-214ENST00000491791 SAA2P0DJI9 122 aaPredicted RBP8.82□□□□□ -1
USP4-214ENST00000491791 SELLP14151 372 aa8.82□□□□□ -1
USP4-214ENST00000491791 DAOP14920 347 aa8.82□□□□□ -1
USP4-214ENST00000491791 CHRNB4P30926 498 aa8.82□□□□□ -1
USP4-214ENST00000491791 TAGLN2P37802 199 aaKnown RBP8.82□□□□□ -1
USP4-214ENST00000491791 NPBWR1P48145 328 aa8.82□□□□□ -1
USP4-214ENST00000491791 MRPS11P82912 194 aaKnown RBP8.82□□□□□ -1
USP4-214ENST00000491791 RUNX1Q01196 453 aa8.82□□□□□ -1
USP4-214ENST00000491791 TMEM41BQ5BJD5 291 aa8.82□□□□□ -1
USP4-214ENST00000491791 C1orf229Q6ZS94 237 aaPredicted RBP8.82□□□□□ -1
USP4-214ENST00000491791 ZNF833PQ6ZTB9 187 aa8.82□□□□□ -1
USP4-214ENST00000491791 FAM216BQ8N7L0 139 aa8.82□□□□□ -1
USP4-214ENST00000491791 OR10P1Q8NGE3 313 aa8.82□□□□□ -1
USP4-214ENST00000491791 CLDND2Q8NHS1 167 aa8.82□□□□□ -1
USP4-214ENST00000491791 SAP30LQ9HAJ7 183 aa8.82□□□□□ -1
USP4-214ENST00000491791 TMEM106BQ9NUM4 274 aa8.82□□□□□ -1
USP4-214ENST00000491791 FOXA2Q9Y261 457 aaPredicted RBP8.82□□□□□ -1
USP4-214ENST00000491791 CADP27708 2225 aa8.81□□□□□ -1
USP4-214ENST00000491791 USF3Q68DE3 2245 aa8.81□□□□□ -1
USP4-214ENST00000491791 ANKRD17O75179 2603 aaKnown RBP8.81□□□□□ -1
USP4-214ENST00000491791 C15orf62A8K5M9 175 aa8.81□□□□□ -1
USP4-214ENST00000491791 PRSS46E5RG02 174 aa8.81□□□□□ -1
USP4-214ENST00000491791 MPDU1O75352 247 aa8.81□□□□□ -1
USP4-214ENST00000491791 NXPH3O95157 252 aa8.81□□□□□ -1
USP4-214ENST00000491791 HRASP01112 189 aa8.81□□□□□ -1
USP4-214ENST00000491791 CD3EP07766 207 aa8.81□□□□□ -1
USP4-214ENST00000491791 SRP19P09132 144 aaKnown RBP8.81□□□□□ -1
USP4-214ENST00000491791 MAS1LP35410 378 aa8.81□□□□□ -1
USP4-214ENST00000491791 ZNF137PP52743 207 aa8.81□□□□□ -1
USP4-214ENST00000491791 ERVK-16P61578 105 aa8.81□□□□□ -1
USP4-214ENST00000491791 CCL20P78556 96 aa8.81□□□□□ -1
USP4-214ENST00000491791 CCL8P80075 99 aa8.81□□□□□ -1
USP4-214ENST00000491791 RHEBQ15382 184 aa8.81□□□□□ -1
USP4-214ENST00000491791 RPL39P5Q59GN2 51 aa8.81□□□□□ -1
USP4-214ENST00000491791 OR2B11Q5JQS5 317 aa8.81□□□□□ -1
USP4-214ENST00000491791 DUX4L9Q6RFH8 374 aaPredicted RBP8.81□□□□□ -1
USP4-214ENST00000491791 LILRB2Q8N423 598 aa8.81□□□□□ -1
USP4-214ENST00000491791 ZNF383Q8NA42 475 aa8.81□□□□□ -1
USP4-214ENST00000491791 OR4A16Q8NH70 328 aa8.81□□□□□ -1
USP4-214ENST00000491791 TMEM204Q9BSN7 226 aa8.81□□□□□ -1
USP4-214ENST00000491791 QTRT1Q9BXR0 403 aaKnown RBP8.81□□□□□ -1
USP4-214ENST00000491791 EIF5A2Q9GZV4 153 aaKnown RBP8.81□□□□□ -1
USP4-214ENST00000491791 TMEM14BQ9NUH8 114 aa8.81□□□□□ -1
USP4-214ENST00000491791 CISD1Q9NZ45 108 aaKnown RBP8.81□□□□□ -1
USP4-214ENST00000491791 SLC25A10Q9UBX3 287 aaPredicted RBP8.81□□□□□ -1
USP4-214ENST00000491791 ZNF257Q9Y2Q1 563 aa8.81□□□□□ -1
USP4-214ENST00000491791 RFNGQ9Y644 331 aa8.81□□□□□ -1
USP4-214ENST00000491791 POLQO75417 2590 aa8.8□□□□□ -1
USP4-214ENST00000491791 ZGRF1Q86YA3 2104 aa8.8□□□□□ -1
USP4-214ENST00000491791 APCP25054 2843 aa8.8□□□□□ -1
USP4-214ENST00000491791 TRBV23-1A0A0A0MS06 115 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms