RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 BET1LQ9NYM9 111 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TAS2R8Q9NYW2 309 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TECRQ9NZ01 308 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 NAT8Q9UHE5 227 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 HSPB8Q9UJY1 196 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 EMCNQ9ULC0 261 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 HHLA2Q9UM44 414 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 HDGFL3Q9Y3E1 203 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RNF115Q9Y4L5 304 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TIMM10BQ9Y5J6 103 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 PCYT1BQ9Y5K3 369 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SNX10Q9Y5X0 201 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 UBIAD1Q9Y5Z9 338 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 NSD1Q96L73 2696 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 DOCK6Q96HP0 2047 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TCHHQ07283 1943 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 CEP192Q8TEP8 1941 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 RYR2Q92736 4967 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 KANTRA0A1W2PQU2 76 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 A0A1W2PRS3 328 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TCRBV9S1A1TA0A576 114 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MBLAC1A4D2B0 266 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR6C6A6NF89 314 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TLCD2A6NGC4 264 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 FRG2CA6NGY1 282 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF727A8MUV8 499 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 FAM220BPB1ANY3 271 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 C21orf140B9A014 251 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF878C9JN71 531 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF670-ZNF695F2Z2N8 137 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 F5H5K5 113 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 F5H768 121 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 H3BQ15 152 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 H7BYZ3 331 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 C19orf84I3L1E1 186 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 K7EN84 100 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 K7EQS6 105 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 DCTN6O00399 190 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SLC17A3O00476 420 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MFNGO00587 321 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 GABRPO00591 440 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PIRO00625 290 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 XKRYO14609 159 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TAAR5O14804 337 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SLC31A1O15431 190 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 FGF16O43320 207 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 EEF1E1O43324 174 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ERI3O43414 337 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF207O43670 478 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ENSAO43768 121 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SLC16A7O60669 478 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ENTPD6O75354 484 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR2A4O95047 310 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MPZL1O95297 269 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 AIFM1O95831 613 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SERPIND1P05546 499 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 CXCL1P09341 107 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PGA4P0DJD7 388 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PGA5P0DJD9 388 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MPC1LP0DKB6 136 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PVRP15151 417 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF19P17023 458 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 GPX2P18283 190 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SDC1P18827 310 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 FUT3P21217 361 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PRTN3P24158 256 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PSMA1P25786 263 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 AK4P27144 223 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 GRPRP30550 384 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TNFSF9P41273 254 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 CRYBB2P43320 205 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 GPR6P46095 362 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 BDKRB1P46663 353 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR3A4PP47883 348 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 HINT1P49773 126 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 CAV2P51636 162 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 HNRNPA3P51991 378 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TCL1AP56279 114 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 CAV3P56539 151 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PIGPP57054 158 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TAS2R30P59541 319 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 RPS23P62266 143 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 CXCL6P80162 114 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H1AQ02539 215 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 HSD52Q0P140 79 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM267Q0VDI3 215 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MLLT11Q13015 90 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 EIF3IQ13347 325 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 KLF5Q13887 457 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ENDOGQ14249 297 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ELAVL3Q14576 367 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SSX1Q16384 188 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PRSS8Q16651 343 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 QRICH1Q2TAL8 776 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SLC36A2Q495M3 483 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MORN2Q502X0 79 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ATP6AP1LQ52LC2 224 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM41BQ5BJD5 291 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SPANXN3Q5MJ09 141 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 DCST2Q5T1A1 773 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms