RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 M0QZK8 103 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 HOXA3O43365 443 aaPredicted RBP11.11□□□□□ -0.63
C9orf3-221ENST00000489562 OR2F2O95006 317 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 S1PR2O95136 353 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 CD24P25063 80 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 MMDQ15546 238 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 POU2AF1Q16633 256 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 SP6Q3SY56 376 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 VMA21Q3ZAQ7 101 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 ZNF695Q8IW36 515 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 CADM3Q8N126 398 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 LRTM2Q8N967 370 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 NPBQ8NG41 125 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 VSTM2AQ8TAG5 236 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 ZNF431Q8TF32 576 aaPredicted RBP11.11□□□□□ -0.63
C9orf3-221ENST00000489562 CASTOR1Q8WTX7 329 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 RBPMSQ93062 196 aaKnown RBP11.11□□□□□ -0.63
C9orf3-221ENST00000489562 TMEM56Q96MV1 263 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 RBM14Q96PK6 669 aaKnown RBP11.11□□□□□ -0.63
C9orf3-221ENST00000489562 BEX1Q9HBH7 125 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 KIAA1456Q9P272 454 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 SHPKQ9UHJ6 478 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 MOB4Q9Y3A3 225 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 TMEM56-RWDD3S4R434 201 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 NBR2O15453 112 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 FGF16O43320 207 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 CREBL2O60519 120 aaPredicted RBP11.1□□□□□ -0.63
C9orf3-221ENST00000489562 NDUFA3O95167 84 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 HILS1P60008 231 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 UBE2KP61086 200 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 HNF4GQ14541 408 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 MITD1Q8WV92 249 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 R3HDM4Q96D70 268 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 RHOVQ96L33 236 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 PHB2Q99623 299 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 SLC25A33Q9BSK2 321 aa11.1□□□□□ -0.63
C9orf3-221ENST00000489562 TNCP24821 2201 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 DNAJC9-AS1A6NH13 148 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 MARCH11A6NNE9 402 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 RRHO14718 337 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 IGLV2-23P01705 113 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 AKR1C2P52895 323 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 RPL15P61313 204 aaKnown RBP11.09□□□□□ -0.63
C9orf3-221ENST00000489562 LY6EQ16553 131 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 TATDN3Q17R31 274 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 TMEM268Q5VZI3 342 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 FAM219AQ8IW50 185 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 TEX45Q8NA69 505 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 DMBX1Q8NFW5 382 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 OR4A5Q8NH83 315 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 SEC22CQ9BRL7 303 aa11.09□□□□□ -0.63
C9orf3-221ENST00000489562 C7orf66A4D0T2 115 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 NCBP2LA6PVI3 153 aaKnown RBP11.08□□□□□ -0.64
C9orf3-221ENST00000489562 TCF21O43680 179 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 OR2A4O95047 310 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 KRASP01116 189 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 IGKV1-39P01597 117 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 IGKV1D-39P04432 117 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 FGF2P09038 288 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 VDAC1P21796 283 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 PSG5Q15238 335 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 ANKRD55Q3KP44 614 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 H2BFWTQ7Z2G1 175 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 TMEM219Q86XT9 240 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 SELENOHQ8IZQ5 122 aaKnown RBP11.08□□□□□ -0.64
C9orf3-221ENST00000489562 PUSL1Q8N0Z8 303 aaKnown RBP11.08□□□□□ -0.64
C9orf3-221ENST00000489562 C12orf45Q8N5I9 185 aaPredicted RBP11.08□□□□□ -0.64
C9orf3-221ENST00000489562 OR52B4Q8NGK2 314 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 RNASE11Q8TAA1 199 aaKnown RBP11.08□□□□□ -0.64
C9orf3-221ENST00000489562 LHFPL5Q8TAF8 219 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 LSM10Q969L4 123 aaKnown RBP11.08□□□□□ -0.64
C9orf3-221ENST00000489562 RRNAD1Q96FB5 475 aaKnown RBP11.08□□□□□ -0.64
C9orf3-221ENST00000489562 SEC22AQ96IW7 307 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 OR2A7Q96R45 310 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 PLSCR3Q9NRY6 295 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 BET1LQ9NYM9 111 aa11.08□□□□□ -0.64
C9orf3-221ENST00000489562 METTL1Q9UBP6 276 aaKnown RBP11.08□□□□□ -0.64
C9orf3-221ENST00000489562 SRRM4A7MD48 611 aaKnown RBP11.07□□□□□ -0.64
C9orf3-221ENST00000489562 SLC25A17O43808 307 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 KBTBD11O94819 623 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 SAA1P0DJI8 122 aaPredicted RBP11.07□□□□□ -0.64
C9orf3-221ENST00000489562 G6PCP35575 357 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 F2RL1P55085 397 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 PLGLAQ15195 96 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 C5orf64Q2M2E5 130 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 FBLN7Q53RD9 439 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 OR4A47Q6IF82 309 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 FAM71E2Q8N5Q1 922 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 SLC35G3Q8N808 338 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 Q8N9W7 124 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 RITA1Q96K30 269 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 RASL11BQ9BPW5 248 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 CHIAQ9BZP6 476 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 TMEM140Q9NV12 185 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 TMED3Q9Y3Q3 217 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 MMP24Q9Y5R2 645 aa11.07□□□□□ -0.64
C9orf3-221ENST00000489562 PLXNB1O43157 2135 aa11.06□□□□□ -0.64
C9orf3-221ENST00000489562 GPR137BO60478 399 aa11.06□□□□□ -0.64
C9orf3-221ENST00000489562 IFNA21P01568 189 aa11.06□□□□□ -0.64
C9orf3-221ENST00000489562 IGKV1-5P01602 117 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms