RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PDYNP01213 254 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CD8AP01732 235 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 C1QCP02747 245 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 IFNA4P05014 189 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 IFNA16P05015 189 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 RBP1P09455 135 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 PAEPP09466 180 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OCM2P0CE71 109 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OCMP0CE72 109 aaPredicted RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 SCGB1C2P0DMR2 95 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CYBAP13498 195 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SPI1P17947 270 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OGNP20774 298 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 BGNP21810 368 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CCNOP22674 350 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 F8A1P23610 371 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CNTFRP26992 372 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ADORA1P30542 326 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 PHBP35232 272 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 HSPA9P38646 679 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 MAGEA6P43360 314 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 EVX1P49640 407 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CDK9P50750 372 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 ZNF83P51522 516 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SNAP25P60880 206 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 NCALDP61601 193 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TNNC1P63316 161 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CCL7P80098 99 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 REEP5Q00765 189 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 STX3Q13277 289 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SMCO1Q147U7 214 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 GUSBP1Q15486 140 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TRAM1Q15629 374 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TNXAQ16473 311 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 PABPC1L2AQ5JQF8 200 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TIMM23BQ5SRD1 257 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 C9orf64Q5T6V5 341 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 HACD4Q5VWC8 232 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 NXNL2Q5VZ03 156 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TMEM215Q68D42 235 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TMEM42Q69YG0 159 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 RPL13AP3Q6NVV1 102 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 LPCAT3Q6P1A2 487 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 FAM151BQ6UXP7 276 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 PLCZ1Q86YW0 608 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SNX29P2Q8IUI4 249 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ZNF567Q8N184 647 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CLDN22Q8N7P3 220 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 CDRT4Q8N9R6 151 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ACBD4Q8NC06 268 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TMEM35BQ8NCS4 154 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ST6GALNAC3Q8NDV1 305 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ZNF738Q8NE65 137 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OR2D3Q8NGH3 330 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OR11L1Q8NGX0 322 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OR6N2Q8NGY6 317 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OR4K15Q8NH41 348 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 LRRC20Q8TCA0 184 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SCGB1C1Q8TD33 95 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 C16orf78Q8WTQ4 265 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SFT2D1Q8WV19 159 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TWIST2Q8WVJ9 160 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 RASSF5Q8WWW0 418 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 MAFIPQ8WZ33 124 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 GTF2H4Q92759 462 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ZHX1-C8orf76Q96EF9 292 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 BIRC8Q96P09 236 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SERPINB11Q96P15 392 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OR8B2Q96RD0 313 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 MED18Q9BUE0 208 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 DDA1Q9BW61 102 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 UGT2B28Q9BY64 529 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 MROQ9BYG7 248 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 REG4Q9BYZ8 158 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 NXF2Q9GZY0 626 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 SLC25A31Q9H0C2 315 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 OR2D2Q9H210 308 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SYT4Q9H2B2 425 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CENPHQ9H3R5 247 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 NMNAT1Q9HAN9 279 aaPredicted RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 HRASLSQ9HDD0 168 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SDHAF2Q9NX18 166 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 MRPL16Q9NX20 251 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 NKIRAS1Q9NYS0 192 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 GLTPQ9NZD2 209 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 VAPAQ9P0L0 249 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TMEM216Q9P0N5 145 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 VPREB3Q9UKI3 123 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 NXT1Q9UKK6 140 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 OR52A1Q9UKL2 312 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 PSMD13Q9UNM6 376 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 UTP11Q9Y3A2 253 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 TONSLQ96HA7 1378 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TMEM2Q9UHN6 1383 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 KDM6AO15550 1401 aaPredicted RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 DCCP43146 1447 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TNS3Q68CZ2 1445 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 RIMS2Q9UQ26 1411 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 NUP153P49790 1475 aaKnown RBP0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms