RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TBX6O95947 436 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-210ENST00000487017 CRYBB3P26998 211 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 SFRP2Q96HF1 295 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 COL25A1Q9BXS0 654 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-210ENST00000487017 IGKV3D-11A0A0A0MRZ8 115 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 TRAV14DV4A0A0A6YYC5 116 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 TIAF1O95411 115 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 KRTCAP3Q53RY4 240 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 GALNT14Q96FL9 552 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 SCN10AQ9Y5Y9 1956 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 RALGAPA2Q2PPJ7 1873 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 TMEM250H0YL14 139 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 C19orf24Q9BVV8 132 aa14.03□□□□□ -0.16
COL7A1-210ENST00000487017 TRBV9A0A0B4J1U6 114 aa14.02□□□□□ -0.16
COL7A1-210ENST00000487017 LEPROTL1O95214 131 aa14.02□□□□□ -0.16
COL7A1-210ENST00000487017 LINC00470Q9BZP3 86 aa14.02□□□□□ -0.16
COL7A1-210ENST00000487017 IGFBP3P17936 291 aaPredicted RBP14.02□□□□□ -0.16
COL7A1-210ENST00000487017 C19orf54Q5BKX5 351 aa14.02□□□□□ -0.16
COL7A1-210ENST00000487017 ABHD12Q8N2K0 398 aa14.02□□□□□ -0.16
COL7A1-210ENST00000487017 hCG_38984A0A1B0GV85 526 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 J3QW42 95 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 SRIP30626 198 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 OR4A47Q6IF82 309 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 PGLYRP4Q96LB8 373 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 SEC16AO15027 2179 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 SCGB1A1P11684 91 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 TMEM171Q8WVE6 324 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 TMEM177Q53S58 311 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 RPRMQ9NS64 109 aa14.02□□□□□ -0.17
COL7A1-210ENST00000487017 ZNF256Q9Y2P7 627 aaPredicted RBP14.02□□□□□ -0.17
COL7A1-210ENST00000487017 CHCHD2Q9Y6H1 151 aaPredicted RBP14.02□□□□□ -0.17
COL7A1-210ENST00000487017 PATJQ8NI35 1801 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 NKX2-8O15522 239 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 GPR6P46095 362 aaPredicted RBP14.01□□□□□ -0.17
COL7A1-210ENST00000487017 PLXNA1Q9UIW2 1896 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 SYNGR3O43761 229 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 ZNF146Q15072 292 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 PIKFYVEQ9Y2I7 2098 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 VENTXO95231 258 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 TMEM78Q5T7P6 136 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 RCC1LQ96I51 464 aaKnown RBP14.01□□□□□ -0.17
COL7A1-210ENST00000487017 UBE2L6O14933 153 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 SLC25A17O43808 307 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 CKS2P33552 79 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 MAS1LP35410 378 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 C12orf54Q6X4T0 127 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 TMEM183AQ8IXX5 376 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 VKORC1L1Q8N0U8 176 aa14.01□□□□□ -0.17
COL7A1-210ENST00000487017 MRPL32Q9BYC8 188 aaKnown RBP14.01□□□□□ -0.17
COL7A1-210ENST00000487017 TMEM30BQ3MIR4 351 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 STPG3Q8N7X2 389 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 LEAP2Q969E1 77 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 C16orf92Q96LL3 132 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 NABP2Q9BQ15 211 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 BRCA1P38398 1863 aaKnown RBP14□□□□□ -0.17
COL7A1-210ENST00000487017 GCHFRP30047 84 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 GUCD1Q96NT3 240 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 UNC13CQ8NB66 2214 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 A0A1B0GV90 55 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 TGIF1Q15583 401 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 ZNF729A6NN14 1252 aaPredicted RBP14□□□□□ -0.17
COL7A1-210ENST00000487017 AMMECR1LQ6DCA0 310 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 EBLN2Q6P2I7 272 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 PSME4Q14997 1843 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 LOC107984156A0A0G2JMH3 177 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 LOC105371267A0A1B0GV96 52 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 RRN3P1Q2M238 152 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 ARL17AQ8IVW1 177 aa14□□□□□ -0.17
COL7A1-210ENST00000487017 IFNL4K9M1U5 179 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 PF4V1P10720 104 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 TM4SF20Q53R12 229 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 GRIFINA4D1Z8 144 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 NDUFA2O43678 99 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 FOLR2P14207 255 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 PRSS8Q16651 343 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 RSPO4Q2I0M5 234 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-210ENST00000487017 OR51G1Q8NGK1 321 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 OR10S1Q8NGN2 331 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 LOXL4Q96JB6 756 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 PLSCR2Q9NRY7 297 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 UCP1P25874 307 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 SLC25A53Q5H9E4 307 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 NPCDR1Q9BY65 106 aa13.99□□□□□ -0.17
COL7A1-210ENST00000487017 A0A1B0GTI1 187 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 CTSSP25774 331 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 KIAA1644Q3SXP7 199 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 J3QRE1 110 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 ZIC3O60481 467 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 SRP19P09132 144 aaKnown RBP13.98□□□□□ -0.17
COL7A1-210ENST00000487017 WFIKKN1Q96NZ8 548 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 OR4C13Q8NGP0 309 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 OR10J6PQ8NGY7 276 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 CBLN4Q9NTU7 201 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 PLAURQ03405 335 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 CYB5R2Q6BCY4 276 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 CHODLQ9H9P2 273 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 PPP1R32Q7Z5V6 425 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 SHISA5Q8N114 240 aa13.98□□□□□ -0.17
COL7A1-210ENST00000487017 GAGE10A6NGK3 116 aa13.97□□□□□ -0.17
COL7A1-210ENST00000487017 FAM106CPP0CH98 169 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms