RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 COMMD3Q9UBI1 195 aa13.66□□□□□ -0.22
COL6A1-204ENST00000486023 SCOCQ9UIL1 159 aa13.66□□□□□ -0.22
COL6A1-204ENST00000486023 MRPS7Q9Y2R9 242 aaKnown RBP13.66□□□□□ -0.22
COL6A1-204ENST00000486023 ANKRD34BA5PLL1 514 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 XRCC3O43542 346 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 SAP30O75446 220 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 IGLV2-14P01704 120 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 HSPB1P04792 205 aaKnown RBP13.65□□□□□ -0.22
COL6A1-204ENST00000486023 SAA1P0DJI8 122 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-204ENST00000486023 PRSS8Q16651 343 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 MFSD4AQ8N468 514 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 OR13F1Q8NGS4 319 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 OSR1Q8TAX0 266 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-204ENST00000486023 RHOVQ96L33 236 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 SLC5A7Q9GZV3 580 aa13.65□□□□□ -0.22
COL6A1-204ENST00000486023 RAMP3O60896 148 aa13.64□□□□□ -0.23
COL6A1-204ENST00000486023 CD69Q07108 199 aa13.64□□□□□ -0.23
COL6A1-204ENST00000486023 SSX9Q7RTT3 188 aa13.64□□□□□ -0.23
COL6A1-204ENST00000486023 ZNF430Q9H8G1 570 aaPredicted RBP13.64□□□□□ -0.23
COL6A1-204ENST00000486023 TMEM127O75204 238 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 PPYP01298 95 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 PMP2P02689 132 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 CBX5P45973 191 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 TAS2R20P59543 309 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 MRGPRG-AS1Q2M3A8 158 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 C10orf55Q5SWW7 151 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 TMEM17Q86X19 198 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 OR4S2Q8NH73 311 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 SRSF12Q8WXF0 261 aaKnown RBP13.63□□□□□ -0.23
COL6A1-204ENST00000486023 SNAPC3Q92966 411 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 SLC25A46Q96AG3 418 aa13.63□□□□□ -0.23
COL6A1-204ENST00000486023 HSD17B10Q99714 261 aaKnown RBP13.63□□□□□ -0.23
COL6A1-204ENST00000486023 A0A0G2JLM5 398 aa13.62□□□□□ -0.23
COL6A1-204ENST00000486023 PRH1P02810 166 aa13.62□□□□□ -0.23
COL6A1-204ENST00000486023 RFX2P48378 723 aa13.62□□□□□ -0.23
COL6A1-204ENST00000486023 CDK10Q15131 360 aa13.62□□□□□ -0.23
COL6A1-204ENST00000486023 OR5AP2Q8NGF4 316 aa13.62□□□□□ -0.23
COL6A1-204ENST00000486023 TMEM68Q96MH6 324 aa13.62□□□□□ -0.23
COL6A1-204ENST00000486023 EHFQ9NZC4 300 aa13.62□□□□□ -0.23
COL6A1-204ENST00000486023 SMIM31A0A1B0GVY4 71 aa13.61□□□□□ -0.23
COL6A1-204ENST00000486023 SULT1C2O00338 296 aa13.61□□□□□ -0.23
COL6A1-204ENST00000486023 EIF4EP06730 217 aaKnown RBP13.61□□□□□ -0.23
COL6A1-204ENST00000486023 PRSS3P35030 304 aa13.61□□□□□ -0.23
COL6A1-204ENST00000486023 HERV-K104P61576 105 aa13.61□□□□□ -0.23
COL6A1-204ENST00000486023 ZNF66Q6ZN08 573 aa13.61□□□□□ -0.23
COL6A1-204ENST00000486023 MMD2Q8IY49 270 aa13.61□□□□□ -0.23
COL6A1-204ENST00000486023 SPAG16Q8N0X2 631 aa13.61□□□□□ -0.23
COL6A1-204ENST00000486023 FYTTD1Q96QD9 318 aaKnown RBP13.61□□□□□ -0.23
COL6A1-204ENST00000486023 RSRP1Q9BUV0 290 aa13.61□□□□□ -0.23
COL6A1-204ENST00000486023 TINAGL1Q9GZM7 467 aaPredicted RBP13.61□□□□□ -0.23
COL6A1-204ENST00000486023 RANGRFQ9HD47 186 aaPredicted RBP13.61□□□□□ -0.23
COL6A1-204ENST00000486023 HMX3A6NHT5 357 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 H3BUA1 57 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 CREBL2O60519 120 aaPredicted RBP13.6□□□□□ -0.23
COL6A1-204ENST00000486023 OR2A4O95047 310 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 OR9G9P0C7N8 305 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 BRWD1-AS2P59051 145 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 OVCH2Q7RTZ1 564 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 SNX29P2Q8IUI4 249 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 GIMAP1Q8WWP7 306 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 OR2A7Q96R45 310 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 OR4C12Q96R67 309 aa13.6□□□□□ -0.23
COL6A1-204ENST00000486023 NAA50Q9GZZ1 169 aaKnown RBP13.6□□□□□ -0.23
COL6A1-204ENST00000486023 ZNF256Q9Y2P7 627 aaPredicted RBP13.6□□□□□ -0.23
COL6A1-204ENST00000486023 DPPA5A6NC42 116 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 TRIM64CA6NLI5 447 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 HPGDSO60760 199 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 RPA2P15927 270 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 HLA-DMAP28067 261 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 RORCP51449 518 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 INSL3P51460 131 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 EIF4EBP1Q13541 118 aaPredicted RBP13.59□□□□□ -0.23
COL6A1-204ENST00000486023 GPR107Q5VW38 600 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 ZNF818PQ6ZRF7 136 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 HAPLN4Q86UW8 402 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 ZNF429Q86V71 674 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 OR5H2Q8NGV7 314 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 OR51H1Q8NH63 302 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 SPIN2AQ99865 258 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 SPIN2BQ9BPZ2 258 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 ZNF2Q9BSG1 426 aaPredicted RBP13.59□□□□□ -0.23
COL6A1-204ENST00000486023 HRASLSQ9HDD0 168 aa13.59□□□□□ -0.23
COL6A1-204ENST00000486023 FAM25AB3EWG3 89 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 FAM25CB3EWG5 89 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 FAM25GB3EWG6 89 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 HRASP01112 189 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 KIR2DS2P43631 304 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 CATR1Q13166 79 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 RNASE12Q5GAN4 147 aaKnown RBP13.58□□□□□ -0.24
COL6A1-204ENST00000486023 AADACL3Q5VUY0 350 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 C11orf87Q6NUJ2 197 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 ADAD2Q8NCV1 583 aaKnown RBP13.58□□□□□ -0.24
COL6A1-204ENST00000486023 VSTM2AQ8TAG5 236 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 KCTD12Q96CX2 325 aaKnown RBP13.58□□□□□ -0.24
COL6A1-204ENST00000486023 PEF1Q9UBV8 284 aaKnown RBP13.58□□□□□ -0.24
COL6A1-204ENST00000486023 DNAH9Q9NYC9 4486 aa13.58□□□□□ -0.24
COL6A1-204ENST00000486023 RBMXL2O75526 392 aaKnown RBP13.57□□□□□ -0.24
COL6A1-204ENST00000486023 KBTBD11O94819 623 aa13.57□□□□□ -0.24
COL6A1-204ENST00000486023 TRBV12-3P01733 135 aa13.57□□□□□ -0.24
COL6A1-204ENST00000486023 SMIM18P0DKX4 95 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms