RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 DHRS2Q13268 280 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 OXA1LQ15070 435 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 MMDQ15546 238 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 LIAT1Q6ZQX7 453 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 C16orf82Q7Z2V1 217 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 LYG2Q86SG7 212 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 OR8H1Q8NGG4 311 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 R3HDM4Q96D70 268 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 SEC22CQ9BRL7 303 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 AIFM2Q9BRQ8 373 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 CHIAQ9BZP6 476 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 PLSCR3Q9NRY6 295 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 PRR13Q9NZ81 148 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 COMMD9Q9P000 198 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 KIAA1456Q9P272 454 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 CLDN34H7C241 214 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 NBR2O15453 112 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 SLC25A17O43808 307 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 CHST1O43916 411 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 CDS2O95674 445 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 KRASP01116 189 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 IGKV1-39P01597 117 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 IGLV2-23P01705 113 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 IGKV1D-39P04432 117 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 ERVK-16P61578 105 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 PSG5Q15238 335 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 ANKRD55Q3KP44 614 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 VMA21Q3ZAQ7 101 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 SSX9Q7RTT3 188 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 ZNF695Q8IW36 515 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 SELENOHQ8IZQ5 122 aaKnown RBP9.76□□□□□ -0.85
SDC1-206ENST00000482879 VKORC1L1Q8N0U8 176 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 LGI3Q8N145 548 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 NPBQ8NG41 125 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 OR52B4Q8NGK2 314 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 LHFPL5Q8TAF8 219 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 RAB18Q9NP72 206 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 MOB4Q9Y3A3 225 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 ZFHX3Q15911 3703 aa9.76□□□□□ -0.85
SDC1-206ENST00000482879 NIPBLQ6KC79 2804 aaeCLIP9.76□□□□□ -0.85
SDC1-206ENST00000482879 RRHO14718 337 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 GPR137BO60478 399 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 PRAF2O60831 178 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 ATG12O94817 140 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 NDUFA3O95167 84 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 SPDEFO95238 335 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 DUS4LO95620 317 aaKnown RBP9.75□□□□□ -0.85
SDC1-206ENST00000482879 SAA1P0DJI8 122 aaPredicted RBP9.75□□□□□ -0.85
SDC1-206ENST00000482879 G6PCP35575 357 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 UBE2KP61086 200 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 UBA52P62987 128 aaKnown RBP9.75□□□□□ -0.85
SDC1-206ENST00000482879 SRPXP78539 464 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 PLGLAQ15195 96 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 TMEM268Q5VZI3 342 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 Q8N9W7 124 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 TEX45Q8NA69 505 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 MINDY2Q8NBR6 621 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 DMBX1Q8NFW5 382 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 COQ8AQ8NI60 647 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 ZNF431Q8TF32 576 aaPredicted RBP9.75□□□□□ -0.85
SDC1-206ENST00000482879 CHPT1Q8WUD6 406 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 RBPMSQ93062 196 aaKnown RBP9.75□□□□□ -0.85
SDC1-206ENST00000482879 RHOVQ96L33 236 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 TMEM56Q96MV1 263 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 RASL11BQ9BPW5 248 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 FBXL15Q9H469 300 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 GPN1Q9HCN4 374 aaPredicted RBP9.75□□□□□ -0.85
SDC1-206ENST00000482879 METTL1Q9UBP6 276 aaKnown RBP9.75□□□□□ -0.85
SDC1-206ENST00000482879 TMEM56-RWDD3S4R434 201 aa9.75□□□□□ -0.85
SDC1-206ENST00000482879 TET2Q6N021 2002 aaPredicted RBP9.75□□□□□ -0.85
SDC1-206ENST00000482879 SETD2Q9BYW2 2564 aaPredicted RBP9.74□□□□□ -0.85
SDC1-206ENST00000482879 MARCH11A6NNE9 402 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 M0QZK8 103 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 FGF16O43320 207 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 OR2A4O95047 310 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 CRYGBP07316 175 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 RNASE1P07998 156 aaKnown RBP9.74□□□□□ -0.85
SDC1-206ENST00000482879 AKR1C2P52895 323 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 POU2AF1Q16633 256 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 C5orf64Q2M2E5 130 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 LIN54Q6MZP7 749 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 C5orf56Q8N8D9 126 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 RNASE11Q8TAA1 199 aaKnown RBP9.74□□□□□ -0.85
SDC1-206ENST00000482879 VSTM2AQ8TAG5 236 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 IL22RA2Q969J5 263 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 SEC22AQ96IW7 307 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 OR2A7Q96R45 310 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 CLCC1Q96S66 551 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 TMEM140Q9NV12 185 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 SIGLEC9Q9Y336 463 aa9.74□□□□□ -0.85
SDC1-206ENST00000482879 A0A0B4J2A0 478 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 PIGBOS1A0A0B4J2F0 54 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 FAM181BA6NEQ2 426 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 TRIM77I1YAP6 450 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 IGKV1-5P01602 117 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 AMY1AP04745 511 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 TATDN3Q17R31 274 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 OR4A47Q6IF82 309 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 H2BFWTQ7Z2G1 175 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 LYZL2Q7Z4W2 148 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms