RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 RHOVQ96L33 236 aa8.19□□□□□ -1.1
USP39-215ENST00000481409 HARBI1Q96MB7 349 aa8.19□□□□□ -1.1
USP39-215ENST00000481409 FYTTD1Q96QD9 318 aaKnown RBP8.19□□□□□ -1.1
USP39-215ENST00000481409 GPHA2Q96T91 129 aa8.19□□□□□ -1.1
USP39-215ENST00000481409 NEURL2Q9BR09 285 aa8.19□□□□□ -1.1
USP39-215ENST00000481409 RANBP3Q9H6Z4 567 aaPredicted RBP8.19□□□□□ -1.1
USP39-215ENST00000481409 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.19□□□□□ -1.1
USP39-215ENST00000481409 C1RLQ9NZP8 487 aa8.19□□□□□ -1.1
USP39-215ENST00000481409 PITPNC1Q9UKF7 332 aa8.19□□□□□ -1.1
USP39-215ENST00000481409 ITGB1BP2Q9UKP3 347 aa8.19□□□□□ -1.1
USP39-215ENST00000481409 POLQO75417 2590 aa8.19□□□□□ -1.1
USP39-215ENST00000481409 C13orf42A0A1B0GVH6 325 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 PITX3O75364 302 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 MED6O75586 246 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 ADAP1O75689 374 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 KRASP01116 189 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 IGKV1-5P01602 117 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 RLN2P04090 185 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 IGKV1-16P04430 117 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 CXCL3P19876 107 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 MAS1LP35410 378 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 H2BFSP57053 126 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 IL15RAQ13261 267 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 DIAPH2-AS1Q14236 149 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 PDLIM3Q53GG5 364 aaPredicted RBP8.18□□□□□ -1.1
USP39-215ENST00000481409 OR2B11Q5JQS5 317 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 KLF17Q5JT82 389 aaPredicted RBP8.18□□□□□ -1.1
USP39-215ENST00000481409 LDLRAD2Q5SZI1 272 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 C16orf82Q7Z2V1 217 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 PUSL1Q8N0Z8 303 aaKnown RBP8.18□□□□□ -1.1
USP39-215ENST00000481409 CIARTQ8N365 385 aaPredicted RBP8.18□□□□□ -1.1
USP39-215ENST00000481409 ZBTB8BQ8NAP8 495 aaPredicted RBP8.18□□□□□ -1.1
USP39-215ENST00000481409 NPBQ8NG41 125 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 AJUBAQ96IF1 538 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 ST6GAL2Q96JF0 529 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 PRDM13Q9H4Q3 707 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 PRNDQ9UKY0 176 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 ZNF257Q9Y2Q1 563 aa8.18□□□□□ -1.1
USP39-215ENST00000481409 MED13LQ71F56 2210 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 A8MV72 311 aaPredicted RBP8.17□□□□□ -1.1
USP39-215ENST00000481409 FAM25EA8MYX2 175 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 M0QZK8 103 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 SMAD7O15105 426 aaKnown RBP8.17□□□□□ -1.1
USP39-215ENST00000481409 ST8SIA3O43173 380 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 NDUFA3O95167 84 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 AVPP01185 164 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 IGHV4-38-2P0DP08 117 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 PSMB6P28072 239 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 G6PCP35575 357 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 CD83Q01151 205 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 ID3Q02535 119 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 PDZD9Q8IXQ8 264 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 OR4D5Q8NGN0 318 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 OR5B3Q8NH48 314 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 OR4A16Q8NH70 328 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 OR5R1Q8NH85 324 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 OR1S1Q8NH92 325 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 TMEM167AQ8TBQ9 72 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 GPR146Q96CH1 333 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 OR10C1Q96KK4 312 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 TMEM140Q9NV12 185 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 PRR13Q9NZ81 148 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 KIAA1456Q9P272 454 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 CREBBPQ92793 2442 aa8.17□□□□□ -1.1
USP39-215ENST00000481409 NBPF19A0A087WUL8 3843 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 A0A1W2PRD5 423 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 A0A1W2PRF3 423 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 A0A1W2PRM7 423 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 C15orf61A6NNL5 157 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 UPK2O00526 184 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 NBR2O15453 112 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 KBTBD11O94819 623 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 SCAF4O95104 1147 aaKnown RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 IGKV1D-33P01593 117 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 IGKV1-33P01594 117 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 C1QBP02746 253 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 SNRNP70P08621 437 aaKnown RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 PVALBP20472 110 aaPredicted RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 NKX2-1P43699 371 aaPredicted RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 LINC00205P59089 165 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 TAS2R30P59541 319 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 PRB3Q04118 309 aaPredicted RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 KRTAP1-1Q07627 177 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 ITPR2Q14571 2701 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 C2orf68Q2NKX9 166 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 LRRC75BQ2VPJ9 315 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 OR4A47Q6IF82 309 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 MRPL41Q8IXM3 137 aaKnown RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 MMD2Q8IY49 270 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 Q8N6K4 173 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 OR2T35Q8NGX2 323 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 PPP1R1CQ8WVI7 109 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 EAF1Q96JC9 268 aaPredicted RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 HYLS1Q96M11 299 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 CIB3Q96Q77 187 aaPredicted RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 RANGRFQ9HD47 186 aaPredicted RBP8.16□□□□□ -1.1
USP39-215ENST00000481409 TMEM14BQ9NUH8 114 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 CACNG5Q9UF02 275 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 HECTD1Q9ULT8 2610 aa8.16□□□□□ -1.1
USP39-215ENST00000481409 FOXA2Q9Y261 457 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms